Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00750

Experiment: Control_ECRC98_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntflhA and flhe overlap by 4 nucleotidesflhe and yecT are separated by 119 nucleotidesyecT and argS are separated by 176 nucleotides JDDGAC_00745: flhA - flagellar biosynthesis protein FlhA, at 122,259 to 124,337 flhA JDDGAC_00750: flhe - flagellar protein FlhE, at 124,334 to 124,729 flhe JDDGAC_00755: yecT - Uncharacterized protein YecT, at 124,849 to 125,337 yecT JDDGAC_00760: argS - arginine--tRNA ligase, at 125,514 to 127,247 argS Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 123.417 kb on - strand, within flhAat 123.489 kb on - strand, within flhAat 123.538 kb on + strand, within flhAat 123.605 kb on - strand, within flhAat 123.648 kb on - strand, within flhAat 123.721 kb on + strand, within flhAat 123.735 kb on - strand, within flhAat 123.873 kb on - strand, within flhAat 124.265 kb on - strandat 124.348 kb on - strandat 124.356 kb on + strandat 124.411 kb on + strand, within flheat 124.412 kb on - strand, within flheat 124.428 kb on + strand, within flheat 124.938 kb on + strand, within yecTat 125.168 kb on + strand, within yecTat 125.168 kb on + strand, within yecTat 125.271 kb on + strand, within yecTat 125.450 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
remove
123,417 - flhA JDDGAC_00745 0.56 -0.6
123,489 - flhA JDDGAC_00745 0.59 +0.2
123,538 + flhA JDDGAC_00745 0.62 +2.2
123,605 - flhA JDDGAC_00745 0.65 +1.6
123,648 - flhA JDDGAC_00745 0.67 -1.8
123,721 + flhA JDDGAC_00745 0.70 +0.9
123,735 - flhA JDDGAC_00745 0.71 -0.6
123,873 - flhA JDDGAC_00745 0.78 +1.3
124,265 - -0.2
124,348 - -0.8
124,356 + +0.2
124,411 + flhe JDDGAC_00750 0.19 -1.7
124,412 - flhe JDDGAC_00750 0.20 -1.6
124,428 + flhe JDDGAC_00750 0.24 -0.8
124,938 + yecT JDDGAC_00755 0.18 -0.9
125,168 + yecT JDDGAC_00755 0.65 -0.2
125,168 + yecT JDDGAC_00755 0.65 +0.7
125,271 + yecT JDDGAC_00755 0.86 -0.6
125,450 + -0.4

Or see this region's nucleotide sequence