Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24735

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_24720 and JDDGAC_24725 are separated by 149 nucleotidesJDDGAC_24725 and JDDGAC_24730 are separated by 4 nucleotidesJDDGAC_24730 and rrrD are separated by 50 nucleotidesrrrD and tnpB are separated by 75 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and JDDGAC_24750 are separated by 49 nucleotides JDDGAC_24720: JDDGAC_24720 - DUF1737 domain-containing protein, at 4,734,636 to 4,736,489 _24720 JDDGAC_24725: JDDGAC_24725 - holin, at 4,736,639 to 4,736,854 _24725 JDDGAC_24730: JDDGAC_24730 - DUF1327 domain-containing protein, at 4,736,859 to 4,737,203 _24730 JDDGAC_24735: rrrD - lysozyme, at 4,737,254 to 4,737,484 rrrD JDDGAC_24740: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,737,560 to 4,737,940 tnpB JDDGAC_24745: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,737,937 to 4,738,284 tnpB JDDGAC_24750: JDDGAC_24750 - Transposase, at 4,738,334 to 4,738,900 _24750 Position (kb) 4737 4738Strain fitness (log2 ratio) -1 0 1at 4737.433 kb on + strand, within rrrD

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,737,433 + rrrD JDDGAC_24735 0.77 -1.1

Or see this region's nucleotide sequence