Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoS and hosA are separated by 119 nucleotides hosA and ecdB are separated by 146 nucleotides ecdB and edcC overlap by 1 nucleotides
JDDGAC_24160: rpoS - RNA polymerase sigma factor RpoS, at 4,632,354 to 4,633,346
rpoS
JDDGAC_24165: hosA - Transcriptional regulator HosA, at 4,633,466 to 4,633,873
hosA
JDDGAC_24170: ecdB - putative UbiX-like flavin prenyltransferase, at 4,634,020 to 4,634,613
ecdB
JDDGAC_24175: edcC - Phenolic acid decarboxylase, at 4,634,613 to 4,636,040
edcC
Position (kb) 4633
4634 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4632.644 kb on + strand, within rpoS at 4632.645 kb on - strand, within rpoS at 4632.786 kb on + strand, within rpoS at 4632.786 kb on + strand, within rpoS at 4632.786 kb on + strand, within rpoS at 4632.787 kb on - strand, within rpoS at 4632.787 kb on - strand, within rpoS at 4632.787 kb on - strand, within rpoS at 4632.827 kb on + strand, within rpoS at 4632.828 kb on - strand, within rpoS at 4632.842 kb on + strand, within rpoS at 4632.846 kb on - strand, within rpoS at 4632.846 kb on - strand, within rpoS at 4632.868 kb on + strand, within rpoS at 4632.868 kb on + strand, within rpoS at 4632.885 kb on + strand, within rpoS at 4632.915 kb on - strand, within rpoS at 4632.987 kb on - strand, within rpoS at 4632.987 kb on - strand, within rpoS at 4632.999 kb on - strand, within rpoS at 4633.010 kb on + strand, within rpoS at 4633.011 kb on - strand, within rpoS at 4633.011 kb on - strand, within rpoS at 4633.098 kb on - strand, within rpoS at 4633.115 kb on + strand, within rpoS at 4633.172 kb on - strand, within rpoS at 4633.200 kb on + strand, within rpoS at 4633.225 kb on + strand, within rpoS at 4633.225 kb on + strand, within rpoS at 4633.226 kb on - strand, within rpoS at 4633.226 kb on - strand, within rpoS at 4633.226 kb on - strand, within rpoS at 4633.348 kb on + strand at 4633.348 kb on + strand at 4633.348 kb on + strand at 4633.349 kb on - strand at 4633.349 kb on - strand at 4633.468 kb on - strand at 4633.468 kb on - strand at 4633.468 kb on - strand at 4633.581 kb on - strand, within hosA at 4633.718 kb on + strand, within hosA at 4633.748 kb on - strand, within hosA at 4633.748 kb on - strand, within hosA at 4633.774 kb on - strand, within hosA at 4633.774 kb on - strand, within hosA at 4633.774 kb on - strand, within hosA at 4633.842 kb on - strand at 4633.842 kb on - strand at 4633.876 kb on - strand at 4633.975 kb on - strand at 4634.014 kb on + strand at 4634.352 kb on + strand, within ecdB at 4634.397 kb on + strand, within ecdB at 4634.398 kb on - strand, within ecdB at 4634.418 kb on + strand, within ecdB at 4634.418 kb on + strand, within ecdB at 4634.419 kb on - strand, within ecdB at 4634.474 kb on - strand, within ecdB at 4634.475 kb on + strand, within ecdB at 4634.492 kb on + strand, within ecdB at 4634.493 kb on - strand, within ecdB at 4634.555 kb on - strand at 4634.629 kb on + strand at 4634.629 kb on + strand at 4634.771 kb on + strand, within edcC at 4634.807 kb on + strand, within edcC at 4634.808 kb on - strand, within edcC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,632,644 + rpoS JDDGAC_24160 0.29 +0.1 4,632,645 - rpoS JDDGAC_24160 0.29 -0.9 4,632,786 + rpoS JDDGAC_24160 0.44 -1.4 4,632,786 + rpoS JDDGAC_24160 0.44 -0.2 4,632,786 + rpoS JDDGAC_24160 0.44 -0.1 4,632,787 - rpoS JDDGAC_24160 0.44 +0.9 4,632,787 - rpoS JDDGAC_24160 0.44 +0.1 4,632,787 - rpoS JDDGAC_24160 0.44 +0.3 4,632,827 + rpoS JDDGAC_24160 0.48 -0.1 4,632,828 - rpoS JDDGAC_24160 0.48 -0.8 4,632,842 + rpoS JDDGAC_24160 0.49 -0.9 4,632,846 - rpoS JDDGAC_24160 0.50 -1.8 4,632,846 - rpoS JDDGAC_24160 0.50 -0.6 4,632,868 + rpoS JDDGAC_24160 0.52 -0.7 4,632,868 + rpoS JDDGAC_24160 0.52 -1.8 4,632,885 + rpoS JDDGAC_24160 0.53 -0.2 4,632,915 - rpoS JDDGAC_24160 0.56 -0.2 4,632,987 - rpoS JDDGAC_24160 0.64 -0.7 4,632,987 - rpoS JDDGAC_24160 0.64 -0.3 4,632,999 - rpoS JDDGAC_24160 0.65 +0.3 4,633,010 + rpoS JDDGAC_24160 0.66 -0.0 4,633,011 - rpoS JDDGAC_24160 0.66 -0.3 4,633,011 - rpoS JDDGAC_24160 0.66 -0.7 4,633,098 - rpoS JDDGAC_24160 0.75 +0.0 4,633,115 + rpoS JDDGAC_24160 0.77 -0.0 4,633,172 - rpoS JDDGAC_24160 0.82 -0.0 4,633,200 + rpoS JDDGAC_24160 0.85 -0.2 4,633,225 + rpoS JDDGAC_24160 0.88 -0.5 4,633,225 + rpoS JDDGAC_24160 0.88 +0.2 4,633,226 - rpoS JDDGAC_24160 0.88 +0.1 4,633,226 - rpoS JDDGAC_24160 0.88 +0.7 4,633,226 - rpoS JDDGAC_24160 0.88 -0.0 4,633,348 + +0.0 4,633,348 + +0.7 4,633,348 + -0.6 4,633,349 - +0.2 4,633,349 - +0.5 4,633,468 - +0.2 4,633,468 - +0.4 4,633,468 - +0.1 4,633,581 - hosA JDDGAC_24165 0.28 -2.2 4,633,718 + hosA JDDGAC_24165 0.62 +0.4 4,633,748 - hosA JDDGAC_24165 0.69 -1.7 4,633,748 - hosA JDDGAC_24165 0.69 +0.2 4,633,774 - hosA JDDGAC_24165 0.75 -1.0 4,633,774 - hosA JDDGAC_24165 0.75 -1.5 4,633,774 - hosA JDDGAC_24165 0.75 -1.2 4,633,842 - -0.1 4,633,842 - -0.9 4,633,876 - -0.8 4,633,975 - +0.2 4,634,014 + +1.0 4,634,352 + ecdB JDDGAC_24170 0.56 -1.0 4,634,397 + ecdB JDDGAC_24170 0.63 -0.6 4,634,398 - ecdB JDDGAC_24170 0.64 +1.5 4,634,418 + ecdB JDDGAC_24170 0.67 -0.5 4,634,418 + ecdB JDDGAC_24170 0.67 +0.5 4,634,419 - ecdB JDDGAC_24170 0.67 +0.4 4,634,474 - ecdB JDDGAC_24170 0.76 +1.9 4,634,475 + ecdB JDDGAC_24170 0.77 +0.1 4,634,492 + ecdB JDDGAC_24170 0.79 -1.2 4,634,493 - ecdB JDDGAC_24170 0.80 -0.3 4,634,555 - -1.3 4,634,629 + -0.5 4,634,629 + +1.3 4,634,771 + edcC JDDGAC_24175 0.11 -0.6 4,634,807 + edcC JDDGAC_24175 0.14 -0.2 4,634,808 - edcC JDDGAC_24175 0.14 -0.5
Or see this region's nucleotide sequence