Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23195

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygfZ and sdhE are separated by 242 nucleotidessdhE and ygfX overlap by 20 nucleotidesygfX and fldB are separated by 39 nucleotides JDDGAC_23190: ygfZ - tRNA-modifying protein YgfZ, at 4,437,549 to 4,438,529 ygfZ JDDGAC_23195: sdhE - FAD assembly factor SdhE, at 4,438,772 to 4,439,038 sdhE JDDGAC_23200: ygfX - Inner membrane protein YgfX, at 4,439,019 to 4,439,426 ygfX JDDGAC_23205: fldB - flavodoxin FldB, at 4,439,466 to 4,439,987 fldB Position (kb) 4438 4439 4440Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4438.550 kb on - strandat 4438.558 kb on - strandat 4438.558 kb on - strandat 4438.561 kb on - strandat 4438.564 kb on - strandat 4438.564 kb on - strandat 4438.568 kb on - strandat 4438.568 kb on - strandat 4438.568 kb on - strandat 4438.568 kb on - strandat 4438.574 kb on - strandat 4438.583 kb on - strandat 4438.583 kb on - strandat 4438.731 kb on + strandat 4438.732 kb on - strandat 4438.780 kb on + strandat 4438.834 kb on + strand, within sdhEat 4439.131 kb on - strand, within ygfXat 4439.152 kb on + strand, within ygfXat 4439.152 kb on + strand, within ygfXat 4439.153 kb on - strand, within ygfXat 4439.153 kb on - strand, within ygfXat 4439.198 kb on + strand, within ygfXat 4439.199 kb on - strand, within ygfXat 4439.291 kb on + strand, within ygfXat 4439.291 kb on + strand, within ygfXat 4439.345 kb on - strand, within ygfXat 4439.345 kb on - strand, within ygfXat 4439.345 kb on - strand, within ygfXat 4439.424 kb on + strandat 4439.443 kb on + strandat 4439.474 kb on - strandat 4439.539 kb on + strand, within fldBat 4439.539 kb on + strand, within fldBat 4439.751 kb on - strand, within fldBat 4439.888 kb on + strand, within fldBat 4439.888 kb on + strand, within fldBat 4439.889 kb on - strand, within fldBat 4439.892 kb on + strand, within fldBat 4439.892 kb on + strand, within fldBat 4439.892 kb on + strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.893 kb on - strand, within fldBat 4439.918 kb on + strand, within fldBat 4439.950 kb on + strandat 4439.950 kb on + strandat 4439.992 kb on + strandat 4439.992 kb on + strandat 4439.993 kb on - strandat 4439.993 kb on - strandat 4439.993 kb on - strandat 4439.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,438,550 - +0.0
4,438,558 - -3.1
4,438,558 - -0.6
4,438,561 - -1.3
4,438,564 - +0.3
4,438,564 - +1.1
4,438,568 - -0.6
4,438,568 - -0.3
4,438,568 - -0.2
4,438,568 - -2.0
4,438,574 - -0.4
4,438,583 - -0.0
4,438,583 - -0.2
4,438,731 + -0.8
4,438,732 - +0.4
4,438,780 + +0.4
4,438,834 + sdhE JDDGAC_23195 0.23 -1.6
4,439,131 - ygfX JDDGAC_23200 0.27 -1.3
4,439,152 + ygfX JDDGAC_23200 0.33 -2.7
4,439,152 + ygfX JDDGAC_23200 0.33 -1.8
4,439,153 - ygfX JDDGAC_23200 0.33 +1.5
4,439,153 - ygfX JDDGAC_23200 0.33 +0.8
4,439,198 + ygfX JDDGAC_23200 0.44 -0.3
4,439,199 - ygfX JDDGAC_23200 0.44 -0.4
4,439,291 + ygfX JDDGAC_23200 0.67 +0.2
4,439,291 + ygfX JDDGAC_23200 0.67 -0.2
4,439,345 - ygfX JDDGAC_23200 0.80 -1.8
4,439,345 - ygfX JDDGAC_23200 0.80 -1.7
4,439,345 - ygfX JDDGAC_23200 0.80 +1.6
4,439,424 + +0.5
4,439,443 + +1.8
4,439,474 - +1.3
4,439,539 + fldB JDDGAC_23205 0.14 +0.0
4,439,539 + fldB JDDGAC_23205 0.14 +0.4
4,439,751 - fldB JDDGAC_23205 0.55 -0.1
4,439,888 + fldB JDDGAC_23205 0.81 -1.0
4,439,888 + fldB JDDGAC_23205 0.81 +0.2
4,439,889 - fldB JDDGAC_23205 0.81 -2.6
4,439,892 + fldB JDDGAC_23205 0.82 +0.6
4,439,892 + fldB JDDGAC_23205 0.82 -0.7
4,439,892 + fldB JDDGAC_23205 0.82 -1.6
4,439,893 - fldB JDDGAC_23205 0.82 -2.5
4,439,893 - fldB JDDGAC_23205 0.82 -2.2
4,439,893 - fldB JDDGAC_23205 0.82 -0.8
4,439,893 - fldB JDDGAC_23205 0.82 +1.6
4,439,893 - fldB JDDGAC_23205 0.82 +0.9
4,439,893 - fldB JDDGAC_23205 0.82 -1.6
4,439,893 - fldB JDDGAC_23205 0.82 -0.2
4,439,918 + fldB JDDGAC_23205 0.87 -1.3
4,439,950 + -2.0
4,439,950 + +0.4
4,439,992 + -1.4
4,439,992 + -2.5
4,439,993 - -3.8
4,439,993 - -0.2
4,439,993 - +0.8
4,439,993 - -1.7

Or see this region's nucleotide sequence