Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygfZ and sdhE are separated by 242 nucleotides sdhE and ygfX overlap by 20 nucleotides ygfX and fldB are separated by 39 nucleotides
JDDGAC_23190: ygfZ - tRNA-modifying protein YgfZ, at 4,437,549 to 4,438,529
ygfZ
JDDGAC_23195: sdhE - FAD assembly factor SdhE, at 4,438,772 to 4,439,038
sdhE
JDDGAC_23200: ygfX - Inner membrane protein YgfX, at 4,439,019 to 4,439,426
ygfX
JDDGAC_23205: fldB - flavodoxin FldB, at 4,439,466 to 4,439,987
fldB
Position (kb) 4438
4439
4440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4438.550 kb on - strand at 4438.558 kb on - strand at 4438.558 kb on - strand at 4438.561 kb on - strand at 4438.564 kb on - strand at 4438.564 kb on - strand at 4438.568 kb on - strand at 4438.568 kb on - strand at 4438.568 kb on - strand at 4438.568 kb on - strand at 4438.574 kb on - strand at 4438.583 kb on - strand at 4438.583 kb on - strand at 4438.731 kb on + strand at 4438.732 kb on - strand at 4438.780 kb on + strand at 4438.834 kb on + strand, within sdhE at 4439.131 kb on - strand, within ygfX at 4439.152 kb on + strand, within ygfX at 4439.152 kb on + strand, within ygfX at 4439.153 kb on - strand, within ygfX at 4439.153 kb on - strand, within ygfX at 4439.198 kb on + strand, within ygfX at 4439.199 kb on - strand, within ygfX at 4439.291 kb on + strand, within ygfX at 4439.291 kb on + strand, within ygfX at 4439.345 kb on - strand, within ygfX at 4439.345 kb on - strand, within ygfX at 4439.345 kb on - strand, within ygfX at 4439.424 kb on + strand at 4439.443 kb on + strand at 4439.474 kb on - strand at 4439.539 kb on + strand, within fldB at 4439.539 kb on + strand, within fldB at 4439.751 kb on - strand, within fldB at 4439.888 kb on + strand, within fldB at 4439.888 kb on + strand, within fldB at 4439.889 kb on - strand, within fldB at 4439.892 kb on + strand, within fldB at 4439.892 kb on + strand, within fldB at 4439.892 kb on + strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.893 kb on - strand, within fldB at 4439.918 kb on + strand, within fldB at 4439.950 kb on + strand at 4439.950 kb on + strand at 4439.992 kb on + strand at 4439.992 kb on + strand at 4439.993 kb on - strand at 4439.993 kb on - strand at 4439.993 kb on - strand at 4439.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,438,550 - +0.0 4,438,558 - -3.1 4,438,558 - -0.6 4,438,561 - -1.3 4,438,564 - +0.3 4,438,564 - +1.1 4,438,568 - -0.6 4,438,568 - -0.3 4,438,568 - -0.2 4,438,568 - -2.0 4,438,574 - -0.4 4,438,583 - -0.0 4,438,583 - -0.2 4,438,731 + -0.8 4,438,732 - +0.4 4,438,780 + +0.4 4,438,834 + sdhE JDDGAC_23195 0.23 -1.6 4,439,131 - ygfX JDDGAC_23200 0.27 -1.3 4,439,152 + ygfX JDDGAC_23200 0.33 -2.7 4,439,152 + ygfX JDDGAC_23200 0.33 -1.8 4,439,153 - ygfX JDDGAC_23200 0.33 +1.5 4,439,153 - ygfX JDDGAC_23200 0.33 +0.8 4,439,198 + ygfX JDDGAC_23200 0.44 -0.3 4,439,199 - ygfX JDDGAC_23200 0.44 -0.4 4,439,291 + ygfX JDDGAC_23200 0.67 +0.2 4,439,291 + ygfX JDDGAC_23200 0.67 -0.2 4,439,345 - ygfX JDDGAC_23200 0.80 -1.8 4,439,345 - ygfX JDDGAC_23200 0.80 -1.7 4,439,345 - ygfX JDDGAC_23200 0.80 +1.6 4,439,424 + +0.5 4,439,443 + +1.8 4,439,474 - +1.3 4,439,539 + fldB JDDGAC_23205 0.14 +0.0 4,439,539 + fldB JDDGAC_23205 0.14 +0.4 4,439,751 - fldB JDDGAC_23205 0.55 -0.1 4,439,888 + fldB JDDGAC_23205 0.81 -1.0 4,439,888 + fldB JDDGAC_23205 0.81 +0.2 4,439,889 - fldB JDDGAC_23205 0.81 -2.6 4,439,892 + fldB JDDGAC_23205 0.82 +0.6 4,439,892 + fldB JDDGAC_23205 0.82 -0.7 4,439,892 + fldB JDDGAC_23205 0.82 -1.6 4,439,893 - fldB JDDGAC_23205 0.82 -2.5 4,439,893 - fldB JDDGAC_23205 0.82 -2.2 4,439,893 - fldB JDDGAC_23205 0.82 -0.8 4,439,893 - fldB JDDGAC_23205 0.82 +1.6 4,439,893 - fldB JDDGAC_23205 0.82 +0.9 4,439,893 - fldB JDDGAC_23205 0.82 -1.6 4,439,893 - fldB JDDGAC_23205 0.82 -0.2 4,439,918 + fldB JDDGAC_23205 0.87 -1.3 4,439,950 + -2.0 4,439,950 + +0.4 4,439,992 + -1.4 4,439,992 + -2.5 4,439,993 - -3.8 4,439,993 - -0.2 4,439,993 - +0.8 4,439,993 - -1.7
Or see this region's nucleotide sequence