Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08445

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08440 and lomR are separated by 64 nucleotideslomR and JDDGAC_08450 are separated by 67 nucleotides JDDGAC_08440: JDDGAC_08440 - phage tail protein, at 1,485,048 to 1,486,361 _08440 JDDGAC_08445: lomR - Ail/Lom family protein, at 1,486,426 to 1,487,025 lomR JDDGAC_08450: JDDGAC_08450 - phage tail protein, at 1,487,093 to 1,490,566 _08450 Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -2 -1 0 1at 1486.872 kb on + strand, within lomRat 1487.678 kb on - strand, within JDDGAC_08450at 1487.863 kb on - strand, within JDDGAC_08450at 1487.863 kb on - strand, within JDDGAC_08450

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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1,486,872 + lomR JDDGAC_08445 0.74 -2.6
1,487,678 - JDDGAC_08450 0.17 -0.3
1,487,863 - JDDGAC_08450 0.22 -1.1
1,487,863 - JDDGAC_08450 0.22 +0.3

Or see this region's nucleotide sequence