Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt minC and minD are separated by 23 nucleotides minD and minE are separated by 3 nucleotides minE and JDDGAC_06310 are separated by 371 nucleotides
JDDGAC_06295: minC - septum site-determining protein MinC, at 1,100,469 to 1,101,164
minC
JDDGAC_06300: minD - septum site-determining protein MinD, at 1,101,188 to 1,102,000
minD
JDDGAC_06305: minE - cell division topological specificity factor MinE, at 1,102,004 to 1,102,270
minE
JDDGAC_06310: JDDGAC_06310 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,102,642 to 1,103,352
_06310
Position (kb)
1102
1103 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1101.199 kb on + strand at 1101.208 kb on + strand at 1101.320 kb on - strand, within minD at 1101.610 kb on + strand, within minD at 1101.652 kb on + strand, within minD at 1102.003 kb on + strand at 1102.138 kb on + strand, within minE at 1102.389 kb on - strand at 1102.407 kb on - strand at 1102.407 kb on - strand at 1102.705 kb on - strand at 1102.937 kb on - strand, within JDDGAC_06310 at 1102.939 kb on - strand, within JDDGAC_06310 at 1102.939 kb on - strand, within JDDGAC_06310
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 1,101,199 + +0.8 1,101,208 + -0.7 1,101,320 - minD JDDGAC_06300 0.16 -0.4 1,101,610 + minD JDDGAC_06300 0.52 -0.5 1,101,652 + minD JDDGAC_06300 0.57 -1.4 1,102,003 + -0.2 1,102,138 + minE JDDGAC_06305 0.50 -3.2 1,102,389 - -0.2 1,102,407 - -1.0 1,102,407 - +1.5 1,102,705 - -0.7 1,102,937 - JDDGAC_06310 0.41 +0.4 1,102,939 - JDDGAC_06310 0.42 -0.5 1,102,939 - JDDGAC_06310 0.42 +0.0
Or see this region's nucleotide sequence