Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03725

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimA and ydeS are separated by 13 nucleotidesydeS and ydeR are separated by 12 nucleotidesydeR and ydeQ are separated by 59 nucleotides JDDGAC_03715: fimA - type 1 fimbrial major subunit FimA, at 626,445 to 629,096 fimA JDDGAC_03720: ydeS - Uncharacterized fimbrial-like protein YdeS, at 629,110 to 629,640 ydeS JDDGAC_03725: ydeR - Uncharacterized fimbrial-like protein YdeR, at 629,653 to 630,156 ydeR JDDGAC_03730: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 630,216 to 631,130 ydeQ Position (kb) 629 630 631Strain fitness (log2 ratio) -3 -2 -1 0 1at 628.855 kb on + strandat 629.009 kb on + strandat 629.401 kb on - strand, within ydeSat 629.685 kb on + strandat 629.733 kb on + strand, within ydeRat 629.863 kb on - strand, within ydeRat 629.978 kb on + strand, within ydeRat 630.072 kb on + strand, within ydeRat 630.073 kb on - strand, within ydeRat 630.213 kb on - strandat 630.498 kb on - strand, within ydeQat 630.841 kb on + strand, within ydeQat 631.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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628,855 + -1.0
629,009 + +1.6
629,401 - ydeS JDDGAC_03720 0.55 +0.7
629,685 + -1.8
629,733 + ydeR JDDGAC_03725 0.16 -2.8
629,863 - ydeR JDDGAC_03725 0.42 -0.7
629,978 + ydeR JDDGAC_03725 0.64 -0.4
630,072 + ydeR JDDGAC_03725 0.83 -0.8
630,073 - ydeR JDDGAC_03725 0.83 +0.0
630,213 - -1.7
630,498 - ydeQ JDDGAC_03730 0.31 -1.6
630,841 + ydeQ JDDGAC_03730 0.68 -0.1
631,146 + -0.5

Or see this region's nucleotide sequence