Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_02465 and JDDGAC_02470 are separated by 22 nucleotides JDDGAC_02470 and dnaC are separated by 6 nucleotides dnaC and JDDGAC_02480 are separated by 126 nucleotides JDDGAC_02480 and JDDGAC_02485 are separated by 15 nucleotides
JDDGAC_02465: JDDGAC_02465 - Rha family transcriptional regulator, at 442,428 to 442,853
_02465
JDDGAC_02470: JDDGAC_02470 - DNA-binding protein, at 442,876 to 443,838
_02470
JDDGAC_02475: dnaC - DNA replication protein DnaC, at 443,845 to 444,585
dnaC
JDDGAC_02480: JDDGAC_02480 - DUF1627 domain-containing protein, at 444,712 to 445,380
_02480
JDDGAC_02485: JDDGAC_02485 - DUF977 domain-containing protein, at 445,396 to 445,791
_02485
Position (kb) 443
444
445 Strain fitness (log2 ratio) -1
0
1
2 at 442.875 kb on + strand at 442.875 kb on + strand at 443.142 kb on + strand, within JDDGAC_02470 at 443.188 kb on + strand, within JDDGAC_02470 at 443.352 kb on - strand, within JDDGAC_02470 at 444.070 kb on + strand, within dnaC at 444.071 kb on - strand, within dnaC at 444.507 kb on + strand, within dnaC at 444.579 kb on + strand at 444.580 kb on - strand at 444.703 kb on + strand at 444.807 kb on - strand, within JDDGAC_02480 at 445.035 kb on + strand, within JDDGAC_02480 at 445.564 kb on + strand, within JDDGAC_02485 at 445.564 kb on + strand, within JDDGAC_02485 at 445.575 kb on + strand, within JDDGAC_02485
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 442,875 + -1.1 442,875 + +1.7 443,142 + JDDGAC_02470 0.28 +0.2 443,188 + JDDGAC_02470 0.32 +0.4 443,352 - JDDGAC_02470 0.49 +2.0 444,070 + dnaC JDDGAC_02475 0.30 -1.3 444,071 - dnaC JDDGAC_02475 0.30 -1.1 444,507 + dnaC JDDGAC_02475 0.89 -0.2 444,579 + +0.9 444,580 - +0.1 444,703 + -1.6 444,807 - JDDGAC_02480 0.14 +0.4 445,035 + JDDGAC_02480 0.48 +1.1 445,564 + JDDGAC_02485 0.42 -1.2 445,564 + JDDGAC_02485 0.42 -1.2 445,575 + JDDGAC_02485 0.45 +1.2
Or see this region's nucleotide sequence