Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiJ and menI overlap by 4 nucleotides menI and ydiH are separated by 99 nucleotides ydiH and sufA are separated by 548 nucleotides sufA and sufB are separated by 8 nucleotides
JDDGAC_01805: ydiJ - Uncharacterized protein YdiJ, at 320,843 to 323,899
ydiJ
JDDGAC_01810: menI - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 323,896 to 324,306
menI
JDDGAC_01815: ydiH - Uncharacterized protein YdiH, at 324,406 to 324,594
ydiH
JDDGAC_01825: sufA - Fe-S cluster assembly scaffold SufA, at 325,143 to 325,511
sufA
JDDGAC_01830: sufB - Fe-S cluster assembly protein SufB, at 325,520 to 327,007
sufB
Position (kb) 324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 323.468 kb on + strand, within ydiJ at 323.469 kb on - strand, within ydiJ at 323.470 kb on + strand, within ydiJ at 323.470 kb on + strand, within ydiJ at 323.503 kb on + strand, within ydiJ at 323.711 kb on + strand at 323.754 kb on - strand at 323.761 kb on - strand at 323.890 kb on + strand at 323.893 kb on + strand at 323.985 kb on + strand, within menI at 323.985 kb on + strand, within menI at 323.985 kb on + strand, within menI at 324.053 kb on + strand, within menI at 324.053 kb on + strand, within menI at 324.054 kb on - strand, within menI at 324.054 kb on - strand, within menI at 324.107 kb on - strand, within menI at 324.110 kb on + strand, within menI at 324.110 kb on + strand, within menI at 324.111 kb on - strand, within menI at 324.111 kb on - strand, within menI at 324.197 kb on + strand, within menI at 324.370 kb on + strand at 324.371 kb on - strand at 324.405 kb on + strand at 324.405 kb on + strand at 324.406 kb on - strand at 324.406 kb on - strand at 324.406 kb on - strand at 324.506 kb on + strand, within ydiH at 324.531 kb on + strand, within ydiH at 324.551 kb on + strand, within ydiH at 324.604 kb on - strand at 324.665 kb on - strand at 324.678 kb on + strand at 324.799 kb on - strand at 324.799 kb on - strand at 324.846 kb on - strand at 324.885 kb on - strand at 324.885 kb on - strand at 325.017 kb on + strand at 325.017 kb on + strand at 325.018 kb on - strand at 325.018 kb on - strand at 325.026 kb on + strand at 325.026 kb on + strand at 325.110 kb on + strand at 325.111 kb on - strand at 325.137 kb on - strand at 325.306 kb on - strand, within sufA at 325.400 kb on + strand, within sufA at 325.466 kb on + strand, within sufA at 325.467 kb on - strand, within sufA at 325.510 kb on - strand at 325.519 kb on + strand at 325.519 kb on + strand at 325.519 kb on + strand at 325.519 kb on + strand at 325.519 kb on + strand at 325.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 323,468 + ydiJ JDDGAC_01805 0.86 -1.8 323,469 - ydiJ JDDGAC_01805 0.86 -0.0 323,470 + ydiJ JDDGAC_01805 0.86 +0.2 323,470 + ydiJ JDDGAC_01805 0.86 -2.0 323,503 + ydiJ JDDGAC_01805 0.87 -0.5 323,711 + +0.5 323,754 - +0.7 323,761 - -0.6 323,890 + +0.8 323,893 + +2.1 323,985 + menI JDDGAC_01810 0.22 -0.4 323,985 + menI JDDGAC_01810 0.22 -0.1 323,985 + menI JDDGAC_01810 0.22 -1.0 324,053 + menI JDDGAC_01810 0.38 +0.2 324,053 + menI JDDGAC_01810 0.38 +0.2 324,054 - menI JDDGAC_01810 0.38 +0.8 324,054 - menI JDDGAC_01810 0.38 -1.2 324,107 - menI JDDGAC_01810 0.51 +1.9 324,110 + menI JDDGAC_01810 0.52 -0.4 324,110 + menI JDDGAC_01810 0.52 -0.7 324,111 - menI JDDGAC_01810 0.52 +0.4 324,111 - menI JDDGAC_01810 0.52 +0.4 324,197 + menI JDDGAC_01810 0.73 -0.5 324,370 + -0.6 324,371 - -0.5 324,405 + -2.1 324,405 + +1.1 324,406 - +1.3 324,406 - +0.1 324,406 - -0.1 324,506 + ydiH JDDGAC_01815 0.53 -1.9 324,531 + ydiH JDDGAC_01815 0.66 -0.8 324,551 + ydiH JDDGAC_01815 0.77 -0.7 324,604 - -0.3 324,665 - +0.8 324,678 + -0.2 324,799 - +1.4 324,799 - -0.3 324,846 - -0.2 324,885 - -1.6 324,885 - +2.5 325,017 + +1.1 325,017 + +0.3 325,018 - +1.5 325,018 - -2.2 325,026 + +0.2 325,026 + -2.5 325,110 + -3.7 325,111 - -1.2 325,137 - -0.5 325,306 - sufA JDDGAC_01825 0.44 +0.1 325,400 + sufA JDDGAC_01825 0.70 -0.1 325,466 + sufA JDDGAC_01825 0.88 +0.5 325,467 - sufA JDDGAC_01825 0.88 -1.5 325,510 - +2.9 325,519 + -0.3 325,519 + +0.5 325,519 + +0.5 325,519 + +0.4 325,519 + +0.9 325,580 + -0.2
Or see this region's nucleotide sequence