Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01515

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspy and ves are separated by 202 nucleotidesves and cho overlap by 41 nucleotidescho and nadE are separated by 229 nucleotides JDDGAC_01505: spy - ATP-independent periplasmic protein-refolding chaperone Spy, at 264,102 to 264,587 spy JDDGAC_01510: ves - environmental stress-induced protein Ves, at 264,790 to 265,365 ves JDDGAC_01515: cho - excinuclease Cho, at 265,325 to 266,212 cho JDDGAC_01525: nadE - ammonia-dependent NAD(+) synthetase, at 266,442 to 267,269 nadE Position (kb) 265 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 264.383 kb on + strand, within spyat 264.443 kb on + strand, within spyat 264.443 kb on + strand, within spyat 264.516 kb on - strand, within spyat 264.714 kb on + strandat 264.796 kb on + strandat 264.797 kb on - strandat 264.811 kb on - strandat 264.963 kb on - strand, within vesat 265.025 kb on + strand, within vesat 265.114 kb on - strand, within vesat 265.161 kb on + strand, within vesat 265.170 kb on + strand, within vesat 265.292 kb on + strand, within vesat 265.293 kb on - strand, within vesat 265.371 kb on + strandat 265.372 kb on - strandat 265.394 kb on - strandat 265.499 kb on - strand, within choat 265.502 kb on - strand, within choat 266.018 kb on + strand, within choat 266.064 kb on + strand, within choat 266.064 kb on + strand, within choat 266.065 kb on - strand, within choat 266.065 kb on - strand, within choat 266.100 kb on + strand, within choat 266.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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264,383 + spy JDDGAC_01505 0.58 +0.8
264,443 + spy JDDGAC_01505 0.70 -0.3
264,443 + spy JDDGAC_01505 0.70 +0.5
264,516 - spy JDDGAC_01505 0.85 -1.0
264,714 + -0.4
264,796 + +2.3
264,797 - +0.8
264,811 - -1.2
264,963 - ves JDDGAC_01510 0.30 +0.5
265,025 + ves JDDGAC_01510 0.41 +0.0
265,114 - ves JDDGAC_01510 0.56 +0.6
265,161 + ves JDDGAC_01510 0.64 +0.2
265,170 + ves JDDGAC_01510 0.66 +0.6
265,292 + ves JDDGAC_01510 0.87 -2.0
265,293 - ves JDDGAC_01510 0.87 +0.0
265,371 + +0.9
265,372 - -0.4
265,394 - -0.0
265,499 - cho JDDGAC_01515 0.20 -0.5
265,502 - cho JDDGAC_01515 0.20 -0.2
266,018 + cho JDDGAC_01515 0.78 -2.7
266,064 + cho JDDGAC_01515 0.83 +0.7
266,064 + cho JDDGAC_01515 0.83 -2.9
266,065 - cho JDDGAC_01515 0.83 -1.3
266,065 - cho JDDGAC_01515 0.83 -1.1
266,100 + cho JDDGAC_01515 0.87 -1.9
266,160 + +0.8

Or see this region's nucleotide sequence