Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides prc and htpX are separated by 191 nucleotides
JDDGAC_01030: msrC - L-methionine (R)-S-oxide reductase, at 171,227 to 171,778
msrC
JDDGAC_01035: proQ - RNA chaperone ProQ, at 171,875 to 172,573
proQ
JDDGAC_01040: prc - carboxy terminal-processing peptidase, at 172,593 to 174,641
prc
JDDGAC_01045: htpX - protease HtpX, at 174,833 to 175,714
htpX
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 171.635 kb on - strand, within msrC at 171.655 kb on + strand, within msrC at 171.656 kb on - strand, within msrC at 171.658 kb on + strand, within msrC at 171.659 kb on - strand, within msrC at 171.699 kb on + strand, within msrC at 171.699 kb on + strand, within msrC at 171.699 kb on + strand, within msrC at 171.792 kb on + strand at 171.792 kb on + strand at 171.799 kb on + strand at 171.815 kb on - strand at 171.815 kb on - strand at 171.816 kb on + strand at 171.860 kb on + strand at 171.889 kb on + strand at 171.898 kb on + strand at 171.904 kb on + strand at 172.065 kb on - strand, within proQ at 172.096 kb on + strand, within proQ at 172.161 kb on + strand, within proQ at 172.161 kb on + strand, within proQ at 172.488 kb on + strand, within proQ at 172.488 kb on + strand, within proQ at 172.491 kb on + strand, within proQ at 172.534 kb on + strand at 172.667 kb on + strand at 172.830 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.275 kb on - strand, within prc at 173.411 kb on + strand, within prc at 173.411 kb on + strand, within prc at 173.411 kb on + strand, within prc at 173.509 kb on + strand, within prc at 173.509 kb on + strand, within prc at 173.513 kb on + strand, within prc at 173.513 kb on + strand, within prc at 173.551 kb on + strand, within prc at 174.061 kb on - strand, within prc at 174.304 kb on + strand, within prc at 174.317 kb on + strand, within prc at 174.317 kb on + strand, within prc at 174.639 kb on + strand at 174.640 kb on - strand at 174.642 kb on + strand at 174.912 kb on + strand at 175.008 kb on + strand, within htpX at 175.072 kb on + strand, within htpX at 175.077 kb on + strand, within htpX at 175.127 kb on + strand, within htpX at 175.127 kb on + strand, within htpX at 175.276 kb on + strand, within htpX at 175.415 kb on + strand, within htpX
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 171,635 - msrC JDDGAC_01030 0.74 -0.9 171,655 + msrC JDDGAC_01030 0.78 -1.8 171,656 - msrC JDDGAC_01030 0.78 -0.4 171,658 + msrC JDDGAC_01030 0.78 -0.6 171,659 - msrC JDDGAC_01030 0.78 -0.8 171,699 + msrC JDDGAC_01030 0.86 +0.8 171,699 + msrC JDDGAC_01030 0.86 -1.3 171,699 + msrC JDDGAC_01030 0.86 +0.3 171,792 + -0.9 171,792 + +0.7 171,799 + -1.6 171,815 - -1.8 171,815 - -0.2 171,816 + -1.8 171,860 + -2.4 171,889 + -4.4 171,898 + -0.3 171,904 + -1.8 172,065 - proQ JDDGAC_01035 0.27 -4.0 172,096 + proQ JDDGAC_01035 0.32 -1.0 172,161 + proQ JDDGAC_01035 0.41 -0.2 172,161 + proQ JDDGAC_01035 0.41 -0.7 172,488 + proQ JDDGAC_01035 0.88 -0.6 172,488 + proQ JDDGAC_01035 0.88 -1.0 172,491 + proQ JDDGAC_01035 0.88 -0.5 172,534 + -0.6 172,667 + -0.9 172,830 + prc JDDGAC_01040 0.12 -0.7 173,028 + prc JDDGAC_01040 0.21 -1.0 173,028 + prc JDDGAC_01040 0.21 -1.0 173,028 + prc JDDGAC_01040 0.21 -0.8 173,028 + prc JDDGAC_01040 0.21 -2.1 173,028 + prc JDDGAC_01040 0.21 -2.9 173,030 + prc JDDGAC_01040 0.21 -2.9 173,030 + prc JDDGAC_01040 0.21 -0.9 173,030 + prc JDDGAC_01040 0.21 +0.9 173,275 - prc JDDGAC_01040 0.33 -2.4 173,411 + prc JDDGAC_01040 0.40 -1.0 173,411 + prc JDDGAC_01040 0.40 -1.5 173,411 + prc JDDGAC_01040 0.40 -1.2 173,509 + prc JDDGAC_01040 0.45 -1.3 173,509 + prc JDDGAC_01040 0.45 -1.1 173,513 + prc JDDGAC_01040 0.45 -0.8 173,513 + prc JDDGAC_01040 0.45 -1.4 173,551 + prc JDDGAC_01040 0.47 -2.0 174,061 - prc JDDGAC_01040 0.72 -1.3 174,304 + prc JDDGAC_01040 0.84 -3.4 174,317 + prc JDDGAC_01040 0.84 -0.4 174,317 + prc JDDGAC_01040 0.84 +0.6 174,639 + +1.3 174,640 - -0.5 174,642 + +1.1 174,912 + +0.1 175,008 + htpX JDDGAC_01045 0.20 +0.8 175,072 + htpX JDDGAC_01045 0.27 +0.6 175,077 + htpX JDDGAC_01045 0.28 +0.1 175,127 + htpX JDDGAC_01045 0.33 +0.6 175,127 + htpX JDDGAC_01045 0.33 +0.2 175,276 + htpX JDDGAC_01045 0.50 +1.3 175,415 + htpX JDDGAC_01045 0.66 -1.1
Or see this region's nucleotide sequence