Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00155

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthiuH and hprR are separated by 21 nucleotideshprR and hprS overlap by 1 nucleotideshprS and hchA are separated by 107 nucleotides JDDGAC_00145: hiuH - hydroxyisourate hydrolase, at 25,323 to 25,736 hiuH JDDGAC_00150: hprR - response regulator transcription factor HprR, at 25,758 to 26,540 hprR JDDGAC_00155: hprS - two-component system sensor histidine kinase HprS, at 26,540 to 27,898 hprS JDDGAC_00160: hchA - protein deglycase HchA, at 28,006 to 28,857 hchA Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 25.741 kb on - strandat 25.809 kb on + strandat 25.845 kb on + strand, within hprRat 25.846 kb on - strand, within hprRat 26.001 kb on + strand, within hprRat 26.021 kb on + strand, within hprRat 26.099 kb on + strand, within hprRat 26.158 kb on - strand, within hprRat 26.414 kb on + strand, within hprRat 26.765 kb on - strand, within hprSat 27.048 kb on + strand, within hprSat 27.135 kb on - strand, within hprSat 27.862 kb on + strandat 27.862 kb on + strandat 27.902 kb on - strandat 27.956 kb on - strandat 28.008 kb on - strandat 28.101 kb on + strand, within hchAat 28.101 kb on + strand, within hchAat 28.102 kb on - strand, within hchAat 28.102 kb on - strand, within hchAat 28.102 kb on - strand, within hchAat 28.102 kb on - strand, within hchAat 28.102 kb on - strand, within hchAat 28.191 kb on + strand, within hchAat 28.192 kb on - strand, within hchAat 28.193 kb on + strand, within hchAat 28.194 kb on - strand, within hchAat 28.346 kb on - strand, within hchAat 28.358 kb on - strand, within hchAat 28.358 kb on - strand, within hchAat 28.384 kb on - strand, within hchAat 28.489 kb on - strand, within hchAat 28.611 kb on - strand, within hchAat 28.611 kb on - strand, within hchAat 28.863 kb on - strandat 28.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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25,741 - +0.3
25,809 + +1.9
25,845 + hprR JDDGAC_00150 0.11 +0.4
25,846 - hprR JDDGAC_00150 0.11 -1.1
26,001 + hprR JDDGAC_00150 0.31 -1.3
26,021 + hprR JDDGAC_00150 0.34 +1.8
26,099 + hprR JDDGAC_00150 0.44 -0.5
26,158 - hprR JDDGAC_00150 0.51 -0.6
26,414 + hprR JDDGAC_00150 0.84 -0.6
26,765 - hprS JDDGAC_00155 0.17 -1.6
27,048 + hprS JDDGAC_00155 0.37 -0.4
27,135 - hprS JDDGAC_00155 0.44 -1.6
27,862 + -0.6
27,862 + +0.4
27,902 - -0.7
27,956 - -1.8
28,008 - +0.2
28,101 + hchA JDDGAC_00160 0.11 -1.7
28,101 + hchA JDDGAC_00160 0.11 -2.0
28,102 - hchA JDDGAC_00160 0.11 -0.5
28,102 - hchA JDDGAC_00160 0.11 -1.0
28,102 - hchA JDDGAC_00160 0.11 -0.5
28,102 - hchA JDDGAC_00160 0.11 +0.7
28,102 - hchA JDDGAC_00160 0.11 -0.8
28,191 + hchA JDDGAC_00160 0.22 +0.0
28,192 - hchA JDDGAC_00160 0.22 +1.4
28,193 + hchA JDDGAC_00160 0.22 +0.2
28,194 - hchA JDDGAC_00160 0.22 +0.1
28,346 - hchA JDDGAC_00160 0.40 -0.4
28,358 - hchA JDDGAC_00160 0.41 -0.5
28,358 - hchA JDDGAC_00160 0.41 +0.2
28,384 - hchA JDDGAC_00160 0.44 -1.2
28,489 - hchA JDDGAC_00160 0.57 +0.7
28,611 - hchA JDDGAC_00160 0.71 +0.3
28,611 - hchA JDDGAC_00160 0.71 +0.7
28,863 - +2.0
28,895 + -1.3

Or see this region's nucleotide sequence