Experiment: WM_TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25705 and JDDGAC_25710 overlap by 4 nucleotides JDDGAC_25710 and yfgI are separated by 217 nucleotides yfgI and yfgH are separated by 15 nucleotides yfgH and yfgG are separated by 313 nucleotides
JDDGAC_25705: JDDGAC_25705 - endolysin, at 4,911,514 to 4,912,143
_25705
JDDGAC_25710: JDDGAC_25710 - DUF2514 domain-containing protein, at 4,912,140 to 4,912,622
_25710
JDDGAC_25715: yfgI - Uncharacterized protein YfgI, at 4,912,840 to 4,913,379
yfgI
JDDGAC_25720: yfgH - Uncharacterized lipoprotein YfgH, at 4,913,395 to 4,913,910
yfgH
JDDGAC_25725: yfgG - Uncharacterized protein YfgG, at 4,914,224 to 4,914,397
yfgG
Position (kb) 4912
4913
4914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4911.874 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.912 kb on + strand, within JDDGAC_25705 at 4911.916 kb on + strand, within JDDGAC_25705 at 4912.058 kb on + strand, within JDDGAC_25705 at 4912.059 kb on - strand, within JDDGAC_25705 at 4912.125 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.177 kb on + strand at 4912.178 kb on - strand at 4912.181 kb on + strand at 4912.182 kb on - strand at 4912.455 kb on + strand, within JDDGAC_25710 at 4912.455 kb on + strand, within JDDGAC_25710 at 4912.457 kb on + strand, within JDDGAC_25710 at 4912.458 kb on - strand, within JDDGAC_25710 at 4912.602 kb on + strand at 4912.602 kb on + strand at 4912.603 kb on - strand at 4912.785 kb on - strand at 4912.787 kb on + strand at 4912.788 kb on - strand at 4912.831 kb on + strand at 4912.864 kb on - strand at 4912.917 kb on + strand, within yfgI at 4912.918 kb on - strand, within yfgI at 4912.989 kb on + strand, within yfgI at 4913.065 kb on + strand, within yfgI at 4913.125 kb on - strand, within yfgI at 4913.341 kb on + strand at 4913.341 kb on + strand at 4913.341 kb on + strand at 4913.350 kb on + strand at 4913.396 kb on + strand at 4913.396 kb on + strand at 4913.444 kb on + strand at 4913.458 kb on - strand, within yfgH at 4913.458 kb on - strand, within yfgH at 4913.458 kb on - strand, within yfgH at 4913.468 kb on - strand, within yfgH at 4913.479 kb on - strand, within yfgH at 4913.511 kb on + strand, within yfgH at 4913.512 kb on - strand, within yfgH at 4913.512 kb on - strand, within yfgH at 4913.513 kb on + strand, within yfgH at 4913.514 kb on - strand, within yfgH at 4913.514 kb on - strand, within yfgH at 4913.514 kb on - strand, within yfgH at 4913.533 kb on - strand, within yfgH at 4913.534 kb on + strand, within yfgH at 4913.534 kb on + strand, within yfgH at 4913.565 kb on + strand, within yfgH at 4913.577 kb on + strand, within yfgH at 4913.577 kb on + strand, within yfgH at 4913.577 kb on + strand, within yfgH at 4913.578 kb on - strand, within yfgH at 4913.689 kb on - strand, within yfgH at 4914.056 kb on + strand at 4914.312 kb on + strand, within yfgG at 4914.313 kb on - strand, within yfgG at 4914.313 kb on - strand, within yfgG at 4914.313 kb on - strand, within yfgG at 4914.337 kb on + strand, within yfgG at 4914.337 kb on + strand, within yfgG at 4914.337 kb on + strand, within yfgG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP7 remove 4,911,874 + JDDGAC_25705 0.57 +0.2 4,911,912 + JDDGAC_25705 0.63 +0.9 4,911,912 + JDDGAC_25705 0.63 -0.5 4,911,916 + JDDGAC_25705 0.64 -2.4 4,912,058 + JDDGAC_25705 0.86 -3.0 4,912,059 - JDDGAC_25705 0.87 -1.1 4,912,125 + -1.0 4,912,177 + -0.9 4,912,177 + -0.0 4,912,177 + -0.7 4,912,178 - +0.2 4,912,181 + -0.6 4,912,182 - -3.5 4,912,455 + JDDGAC_25710 0.65 -0.8 4,912,455 + JDDGAC_25710 0.65 -1.7 4,912,457 + JDDGAC_25710 0.66 -0.7 4,912,458 - JDDGAC_25710 0.66 +0.4 4,912,602 + +0.3 4,912,602 + -2.3 4,912,603 - -1.1 4,912,785 - +1.9 4,912,787 + +1.0 4,912,788 - +1.5 4,912,831 + +1.3 4,912,864 - -1.5 4,912,917 + yfgI JDDGAC_25715 0.14 -0.8 4,912,918 - yfgI JDDGAC_25715 0.14 +2.8 4,912,989 + yfgI JDDGAC_25715 0.28 +0.2 4,913,065 + yfgI JDDGAC_25715 0.42 +3.0 4,913,125 - yfgI JDDGAC_25715 0.53 -0.5 4,913,341 + -0.5 4,913,341 + +0.4 4,913,341 + -2.7 4,913,350 + -1.1 4,913,396 + -2.4 4,913,396 + +0.4 4,913,444 + +0.5 4,913,458 - yfgH JDDGAC_25720 0.12 +0.8 4,913,458 - yfgH JDDGAC_25720 0.12 -0.9 4,913,458 - yfgH JDDGAC_25720 0.12 -0.4 4,913,468 - yfgH JDDGAC_25720 0.14 +0.8 4,913,479 - yfgH JDDGAC_25720 0.16 -1.0 4,913,511 + yfgH JDDGAC_25720 0.22 +0.1 4,913,512 - yfgH JDDGAC_25720 0.23 +0.9 4,913,512 - yfgH JDDGAC_25720 0.23 +1.7 4,913,513 + yfgH JDDGAC_25720 0.23 +3.0 4,913,514 - yfgH JDDGAC_25720 0.23 +0.8 4,913,514 - yfgH JDDGAC_25720 0.23 -0.8 4,913,514 - yfgH JDDGAC_25720 0.23 +2.0 4,913,533 - yfgH JDDGAC_25720 0.27 +0.9 4,913,534 + yfgH JDDGAC_25720 0.27 +0.8 4,913,534 + yfgH JDDGAC_25720 0.27 +2.0 4,913,565 + yfgH JDDGAC_25720 0.33 +0.8 4,913,577 + yfgH JDDGAC_25720 0.35 -1.9 4,913,577 + yfgH JDDGAC_25720 0.35 -0.5 4,913,577 + yfgH JDDGAC_25720 0.35 +0.9 4,913,578 - yfgH JDDGAC_25720 0.35 -0.4 4,913,689 - yfgH JDDGAC_25720 0.57 +0.4 4,914,056 + +1.1 4,914,312 + yfgG JDDGAC_25725 0.51 -1.3 4,914,313 - yfgG JDDGAC_25725 0.51 -1.0 4,914,313 - yfgG JDDGAC_25725 0.51 -2.0 4,914,313 - yfgG JDDGAC_25725 0.51 -1.3 4,914,337 + yfgG JDDGAC_25725 0.65 +1.7 4,914,337 + yfgG JDDGAC_25725 0.65 +0.5 4,914,337 + yfgG JDDGAC_25725 0.65 -0.3
Or see this region's nucleotide sequence