Experiment: WM_TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lexA and JDDGAC_28800 are separated by 116 nucleotides JDDGAC_28800 and JDDGAC_28805 are separated by 141 nucleotides JDDGAC_28805 and JDDGAC_28810 are separated by 32 nucleotides JDDGAC_28810 and JDDGAC_28815 overlap by 14 nucleotides
JDDGAC_28795: lexA - phage repressor, at 5,514,301 to 5,514,954
lexA
JDDGAC_28800: JDDGAC_28800 - XRE family transcriptional regulator, at 5,515,071 to 5,515,286
_28800
JDDGAC_28805: JDDGAC_28805 - Bacteriophage CII protein, at 5,515,428 to 5,515,724
_28805
JDDGAC_28810: JDDGAC_28810 - Prophage protein, at 5,515,757 to 5,515,918
_28810
JDDGAC_28815: JDDGAC_28815 - replication of DNA, at 5,515,905 to 5,516,726
_28815
Position (kb) 5515
5516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5514.165 kb on - strand at 5514.165 kb on - strand at 5514.185 kb on - strand at 5514.211 kb on + strand at 5514.214 kb on - strand at 5514.242 kb on + strand at 5514.270 kb on - strand at 5514.294 kb on - strand at 5514.970 kb on - strand at 5515.057 kb on - strand at 5515.060 kb on - strand at 5515.070 kb on + strand at 5515.081 kb on + strand at 5515.194 kb on - strand, within JDDGAC_28800 at 5515.244 kb on - strand, within JDDGAC_28800 at 5515.353 kb on - strand at 5515.411 kb on - strand at 5515.752 kb on + strand at 5515.753 kb on - strand at 5515.921 kb on + strand at 5515.970 kb on + strand at 5516.064 kb on - strand, within JDDGAC_28815 at 5516.080 kb on - strand, within JDDGAC_28815 at 5516.260 kb on + strand, within JDDGAC_28815 at 5516.261 kb on - strand, within JDDGAC_28815 at 5516.267 kb on - strand, within JDDGAC_28815 at 5516.267 kb on - strand, within JDDGAC_28815 at 5516.283 kb on - strand, within JDDGAC_28815
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP7 remove 5,514,165 - -2.0 5,514,165 - +0.9 5,514,185 - +0.9 5,514,211 + +0.5 5,514,214 - -2.8 5,514,242 + +1.4 5,514,270 - +1.2 5,514,294 - -1.0 5,514,970 - -1.3 5,515,057 - -1.0 5,515,060 - +1.6 5,515,070 + +1.0 5,515,081 + +1.4 5,515,194 - JDDGAC_28800 0.57 -1.2 5,515,244 - JDDGAC_28800 0.80 -0.9 5,515,353 - -1.9 5,515,411 - -0.9 5,515,752 + +5.4 5,515,753 - -2.0 5,515,921 + -0.9 5,515,970 + -3.1 5,516,064 - JDDGAC_28815 0.19 +1.1 5,516,080 - JDDGAC_28815 0.21 +1.2 5,516,260 + JDDGAC_28815 0.43 -0.4 5,516,261 - JDDGAC_28815 0.43 +0.4 5,516,267 - JDDGAC_28815 0.44 -0.6 5,516,267 - JDDGAC_28815 0.44 -1.4 5,516,283 - JDDGAC_28815 0.46 -1.4
Or see this region's nucleotide sequence