Experiment: WM_TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ecdD and pphB are separated by 40 nucleotides pphB and mutS are separated by 105 nucleotides mutS and JDDGAC_24195 are separated by 75 nucleotides JDDGAC_24195 and ygbA are separated by 76 nucleotides ygbA and flhA are separated by 36 nucleotides
JDDGAC_24180: ecdD - Protein EcdD, at 4,636,051 to 4,636,287
ecdD
JDDGAC_24185: pphB - protein-serine/threonine phosphatase, at 4,636,328 to 4,636,984
pphB
JDDGAC_24190: mutS - DNA mismatch repair protein MutS, at 4,637,090 to 4,639,651
mutS
JDDGAC_24195: JDDGAC_24195 - hypothetical protein, at 4,639,727 to 4,639,861
_24195
JDDGAC_24200: ygbA - nitrous oxide-stimulated promoter family protein, at 4,639,938 to 4,640,291
ygbA
JDDGAC_24205: flhA - formate hydrogenlyase transcriptional activator FlhA, at 4,640,328 to 4,642,406
flhA
Position (kb) 4637
4638
4639
4640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4636.124 kb on + strand, within ecdD at 4636.124 kb on + strand, within ecdD at 4636.124 kb on + strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.126 kb on + strand, within ecdD at 4636.126 kb on + strand, within ecdD at 4636.147 kb on + strand, within ecdD at 4636.150 kb on - strand, within ecdD at 4636.150 kb on - strand, within ecdD at 4636.227 kb on + strand, within ecdD at 4636.278 kb on + strand at 4636.334 kb on + strand at 4636.423 kb on + strand, within pphB at 4636.424 kb on - strand, within pphB at 4636.584 kb on - strand, within pphB at 4636.709 kb on - strand, within pphB at 4636.847 kb on - strand, within pphB at 4636.937 kb on - strand at 4637.222 kb on - strand at 4637.294 kb on - strand at 4637.371 kb on + strand, within mutS at 4637.371 kb on + strand, within mutS at 4637.372 kb on - strand, within mutS at 4637.377 kb on + strand, within mutS at 4637.467 kb on - strand, within mutS at 4637.494 kb on + strand, within mutS at 4637.547 kb on + strand, within mutS at 4637.547 kb on + strand, within mutS at 4637.547 kb on + strand, within mutS at 4637.547 kb on + strand, within mutS at 4637.548 kb on - strand, within mutS at 4637.592 kb on + strand, within mutS at 4637.614 kb on + strand, within mutS at 4637.615 kb on - strand, within mutS at 4637.736 kb on + strand, within mutS at 4637.736 kb on + strand, within mutS at 4637.736 kb on + strand, within mutS at 4637.736 kb on + strand, within mutS at 4637.748 kb on + strand, within mutS at 4637.748 kb on + strand, within mutS at 4637.748 kb on + strand, within mutS at 4637.748 kb on + strand, within mutS at 4637.783 kb on - strand, within mutS at 4637.784 kb on + strand, within mutS at 4637.784 kb on + strand, within mutS at 4637.784 kb on + strand, within mutS at 4637.784 kb on + strand, within mutS at 4637.784 kb on + strand, within mutS at 4637.784 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.785 kb on - strand, within mutS at 4637.818 kb on + strand, within mutS at 4637.818 kb on + strand, within mutS at 4637.953 kb on - strand, within mutS at 4637.953 kb on - strand, within mutS at 4637.953 kb on - strand, within mutS at 4637.953 kb on - strand, within mutS at 4637.964 kb on + strand, within mutS at 4637.965 kb on - strand, within mutS at 4637.965 kb on - strand, within mutS at 4637.965 kb on - strand, within mutS at 4638.134 kb on + strand, within mutS at 4638.150 kb on + strand, within mutS at 4638.150 kb on + strand, within mutS at 4638.151 kb on - strand, within mutS at 4638.184 kb on + strand, within mutS at 4638.185 kb on - strand, within mutS at 4638.185 kb on - strand, within mutS at 4638.186 kb on + strand, within mutS at 4638.186 kb on + strand, within mutS at 4638.193 kb on + strand, within mutS at 4638.193 kb on + strand, within mutS at 4638.231 kb on + strand, within mutS at 4638.231 kb on + strand, within mutS at 4638.232 kb on - strand, within mutS at 4638.250 kb on + strand, within mutS at 4638.367 kb on - strand, within mutS at 4638.367 kb on - strand, within mutS at 4638.473 kb on + strand, within mutS at 4638.474 kb on - strand, within mutS at 4638.474 kb on - strand, within mutS at 4638.483 kb on - strand, within mutS at 4638.494 kb on - strand, within mutS at 4638.494 kb on - strand, within mutS at 4638.550 kb on + strand, within mutS at 4638.627 kb on - strand, within mutS at 4638.715 kb on + strand, within mutS at 4638.826 kb on + strand, within mutS at 4638.827 kb on - strand, within mutS at 4638.848 kb on - strand, within mutS at 4638.890 kb on - strand, within mutS at 4638.905 kb on - strand, within mutS at 4638.924 kb on + strand, within mutS at 4639.113 kb on + strand, within mutS at 4639.113 kb on + strand, within mutS at 4639.114 kb on - strand, within mutS at 4639.133 kb on - strand, within mutS at 4639.219 kb on - strand, within mutS at 4639.309 kb on + strand, within mutS at 4639.495 kb on + strand at 4639.710 kb on - strand at 4639.710 kb on - strand at 4639.717 kb on + strand at 4639.718 kb on - strand at 4639.741 kb on - strand, within JDDGAC_24195 at 4639.826 kb on - strand, within JDDGAC_24195 at 4639.836 kb on + strand, within JDDGAC_24195 at 4639.837 kb on - strand, within JDDGAC_24195 at 4639.849 kb on - strand at 4639.874 kb on - strand at 4639.881 kb on + strand at 4639.882 kb on - strand at 4639.937 kb on + strand at 4639.952 kb on + strand at 4639.952 kb on + strand at 4639.952 kb on + strand at 4640.076 kb on - strand, within ygbA at 4640.108 kb on + strand, within ygbA at 4640.109 kb on - strand, within ygbA at 4640.109 kb on - strand, within ygbA at 4640.209 kb on + strand, within ygbA at 4640.289 kb on + strand at 4640.289 kb on + strand at 4640.290 kb on - strand at 4640.292 kb on + strand at 4640.529 kb on + strand at 4640.538 kb on - strand, within flhA at 4640.574 kb on + strand, within flhA at 4640.613 kb on + strand, within flhA at 4640.614 kb on - strand, within flhA at 4640.634 kb on - strand, within flhA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP7 remove 4,636,124 + ecdD JDDGAC_24180 0.31 +0.8 4,636,124 + ecdD JDDGAC_24180 0.31 +0.1 4,636,124 + ecdD JDDGAC_24180 0.31 +1.7 4,636,125 - ecdD JDDGAC_24180 0.31 -2.4 4,636,125 - ecdD JDDGAC_24180 0.31 -1.1 4,636,125 - ecdD JDDGAC_24180 0.31 +0.1 4,636,126 + ecdD JDDGAC_24180 0.32 +0.0 4,636,126 + ecdD JDDGAC_24180 0.32 -1.4 4,636,147 + ecdD JDDGAC_24180 0.41 +0.5 4,636,150 - ecdD JDDGAC_24180 0.42 -0.0 4,636,150 - ecdD JDDGAC_24180 0.42 -1.0 4,636,227 + ecdD JDDGAC_24180 0.74 +0.5 4,636,278 + +0.1 4,636,334 + +0.7 4,636,423 + pphB JDDGAC_24185 0.14 +2.5 4,636,424 - pphB JDDGAC_24185 0.15 +2.0 4,636,584 - pphB JDDGAC_24185 0.39 -0.7 4,636,709 - pphB JDDGAC_24185 0.58 -0.7 4,636,847 - pphB JDDGAC_24185 0.79 +0.4 4,636,937 - +1.0 4,637,222 - -0.4 4,637,294 - -1.6 4,637,371 + mutS JDDGAC_24190 0.11 -0.0 4,637,371 + mutS JDDGAC_24190 0.11 -1.2 4,637,372 - mutS JDDGAC_24190 0.11 +2.0 4,637,377 + mutS JDDGAC_24190 0.11 -0.1 4,637,467 - mutS JDDGAC_24190 0.15 -2.4 4,637,494 + mutS JDDGAC_24190 0.16 +0.3 4,637,547 + mutS JDDGAC_24190 0.18 +1.1 4,637,547 + mutS JDDGAC_24190 0.18 +2.3 4,637,547 + mutS JDDGAC_24190 0.18 -0.9 4,637,547 + mutS JDDGAC_24190 0.18 +1.8 4,637,548 - mutS JDDGAC_24190 0.18 -1.7 4,637,592 + mutS JDDGAC_24190 0.20 -0.9 4,637,614 + mutS JDDGAC_24190 0.20 +2.9 4,637,615 - mutS JDDGAC_24190 0.20 -0.7 4,637,736 + mutS JDDGAC_24190 0.25 +0.5 4,637,736 + mutS JDDGAC_24190 0.25 -1.6 4,637,736 + mutS JDDGAC_24190 0.25 +2.5 4,637,736 + mutS JDDGAC_24190 0.25 +1.0 4,637,748 + mutS JDDGAC_24190 0.26 -1.6 4,637,748 + mutS JDDGAC_24190 0.26 -1.5 4,637,748 + mutS JDDGAC_24190 0.26 -1.5 4,637,748 + mutS JDDGAC_24190 0.26 -1.6 4,637,783 - mutS JDDGAC_24190 0.27 +1.7 4,637,784 + mutS JDDGAC_24190 0.27 +0.9 4,637,784 + mutS JDDGAC_24190 0.27 +0.7 4,637,784 + mutS JDDGAC_24190 0.27 -1.1 4,637,784 + mutS JDDGAC_24190 0.27 -1.6 4,637,784 + mutS JDDGAC_24190 0.27 -0.3 4,637,784 - mutS JDDGAC_24190 0.27 +2.1 4,637,785 - mutS JDDGAC_24190 0.27 -0.3 4,637,785 - mutS JDDGAC_24190 0.27 +0.7 4,637,785 - mutS JDDGAC_24190 0.27 -0.1 4,637,785 - mutS JDDGAC_24190 0.27 +2.6 4,637,785 - mutS JDDGAC_24190 0.27 -3.0 4,637,785 - mutS JDDGAC_24190 0.27 +1.6 4,637,818 + mutS JDDGAC_24190 0.28 +0.3 4,637,818 + mutS JDDGAC_24190 0.28 -0.8 4,637,953 - mutS JDDGAC_24190 0.34 +3.0 4,637,953 - mutS JDDGAC_24190 0.34 +2.5 4,637,953 - mutS JDDGAC_24190 0.34 -0.9 4,637,953 - mutS JDDGAC_24190 0.34 -0.1 4,637,964 + mutS JDDGAC_24190 0.34 +0.3 4,637,965 - mutS JDDGAC_24190 0.34 +1.0 4,637,965 - mutS JDDGAC_24190 0.34 +1.5 4,637,965 - mutS JDDGAC_24190 0.34 +0.4 4,638,134 + mutS JDDGAC_24190 0.41 -1.0 4,638,150 + mutS JDDGAC_24190 0.41 +0.4 4,638,150 + mutS JDDGAC_24190 0.41 +2.0 4,638,151 - mutS JDDGAC_24190 0.41 +1.6 4,638,184 + mutS JDDGAC_24190 0.43 +0.8 4,638,185 - mutS JDDGAC_24190 0.43 -1.9 4,638,185 - mutS JDDGAC_24190 0.43 +1.0 4,638,186 + mutS JDDGAC_24190 0.43 -2.2 4,638,186 + mutS JDDGAC_24190 0.43 +0.7 4,638,193 + mutS JDDGAC_24190 0.43 -0.5 4,638,193 + mutS JDDGAC_24190 0.43 +0.2 4,638,231 + mutS JDDGAC_24190 0.45 +0.2 4,638,231 + mutS JDDGAC_24190 0.45 +2.1 4,638,232 - mutS JDDGAC_24190 0.45 -1.8 4,638,250 + mutS JDDGAC_24190 0.45 -2.7 4,638,367 - mutS JDDGAC_24190 0.50 -0.7 4,638,367 - mutS JDDGAC_24190 0.50 +1.1 4,638,473 + mutS JDDGAC_24190 0.54 -1.4 4,638,474 - mutS JDDGAC_24190 0.54 -0.0 4,638,474 - mutS JDDGAC_24190 0.54 +0.5 4,638,483 - mutS JDDGAC_24190 0.54 -0.0 4,638,494 - mutS JDDGAC_24190 0.55 +1.3 4,638,494 - mutS JDDGAC_24190 0.55 -1.3 4,638,550 + mutS JDDGAC_24190 0.57 +2.1 4,638,627 - mutS JDDGAC_24190 0.60 +1.4 4,638,715 + mutS JDDGAC_24190 0.63 -0.3 4,638,826 + mutS JDDGAC_24190 0.68 +0.4 4,638,827 - mutS JDDGAC_24190 0.68 +1.6 4,638,848 - mutS JDDGAC_24190 0.69 -0.9 4,638,890 - mutS JDDGAC_24190 0.70 -2.5 4,638,905 - mutS JDDGAC_24190 0.71 +2.6 4,638,924 + mutS JDDGAC_24190 0.72 -0.6 4,639,113 + mutS JDDGAC_24190 0.79 +1.8 4,639,113 + mutS JDDGAC_24190 0.79 -2.0 4,639,114 - mutS JDDGAC_24190 0.79 +0.2 4,639,133 - mutS JDDGAC_24190 0.80 +0.2 4,639,219 - mutS JDDGAC_24190 0.83 -0.2 4,639,309 + mutS JDDGAC_24190 0.87 -1.3 4,639,495 + -0.9 4,639,710 - -1.8 4,639,710 - +0.6 4,639,717 + +0.4 4,639,718 - -0.2 4,639,741 - JDDGAC_24195 0.10 +0.9 4,639,826 - JDDGAC_24195 0.73 +1.1 4,639,836 + JDDGAC_24195 0.81 +0.9 4,639,837 - JDDGAC_24195 0.81 -0.8 4,639,849 - +0.6 4,639,874 - +1.9 4,639,881 + +0.1 4,639,882 - -1.6 4,639,937 + +1.0 4,639,952 + +1.3 4,639,952 + -1.8 4,639,952 + +1.2 4,640,076 - ygbA JDDGAC_24200 0.39 +1.3 4,640,108 + ygbA JDDGAC_24200 0.48 +1.6 4,640,109 - ygbA JDDGAC_24200 0.48 +0.1 4,640,109 - ygbA JDDGAC_24200 0.48 -1.1 4,640,209 + ygbA JDDGAC_24200 0.77 +1.4 4,640,289 + +0.3 4,640,289 + -0.4 4,640,290 - -0.9 4,640,292 + -1.4 4,640,529 + -0.0 4,640,538 - flhA JDDGAC_24205 0.10 -0.0 4,640,574 + flhA JDDGAC_24205 0.12 -0.4 4,640,613 + flhA JDDGAC_24205 0.14 -0.0 4,640,614 - flhA JDDGAC_24205 0.14 +0.1 4,640,634 - flhA JDDGAC_24205 0.15 -0.8
Or see this region's nucleotide sequence