Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29110 and lomR are separated by 66 nucleotides lomR and JDDGAC_29120 are separated by 64 nucleotides JDDGAC_29120 and JDDGAC_29125 are separated by 1 nucleotides JDDGAC_29125 and JDDGAC_29130 are separated by 140 nucleotides
JDDGAC_29110: JDDGAC_29110 - host specificity protein J, at 5,552,585 to 5,556,064
_29110
JDDGAC_29115: lomR - Ail/Lom family protein, at 5,556,131 to 5,556,730
lomR
JDDGAC_29120: JDDGAC_29120 - phage tail protein, at 5,556,795 to 5,558,108
_29120
JDDGAC_29125: JDDGAC_29125 - phage tail protein, at 5,558,110 to 5,558,379
_29125
JDDGAC_29130: JDDGAC_29130 - secretion protein EspS, at 5,558,520 to 5,559,395
_29130
Position (kb) 5556
5557
5558
5559 Strain fitness (log2 ratio) -2
-1
0
1 at 5556.966 kb on + strand, within JDDGAC_29120 at 5557.027 kb on - strand, within JDDGAC_29120 at 5558.519 kb on + strand at 5558.520 kb on - strand at 5558.520 kb on - strand at 5558.525 kb on + strand at 5558.543 kb on - strand at 5558.644 kb on + strand, within JDDGAC_29130 at 5558.870 kb on + strand, within JDDGAC_29130
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 5,556,966 + JDDGAC_29120 0.13 -1.2 5,557,027 - JDDGAC_29120 0.18 -1.5 5,558,519 + +0.3 5,558,520 - -0.3 5,558,520 - -0.2 5,558,525 + +0.3 5,558,543 - -2.7 5,558,644 + JDDGAC_29130 0.14 +0.0 5,558,870 + JDDGAC_29130 0.40 -0.9
Or see this region's nucleotide sequence