Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28960 and JDDGAC_28965 are separated by 202 nucleotides JDDGAC_28965 and JDDGAC_28970 overlap by 4 nucleotides JDDGAC_28970 and JDDGAC_28975 are separated by 462 nucleotides JDDGAC_28975 and JDDGAC_28980 are separated by 41 nucleotides
JDDGAC_28960: JDDGAC_28960 - lysis protein, at 5,530,980 to 5,531,417
_28960
JDDGAC_28965: JDDGAC_28965 - DNA-binding protein, at 5,531,620 to 5,532,117
_28965
JDDGAC_28970: JDDGAC_28970 - DNA-binding protein, at 5,532,114 to 5,532,371
_28970
JDDGAC_28975: JDDGAC_28975 - DUF3950 domain-containing protein, at 5,532,834 to 5,533,061
_28975
JDDGAC_28980: JDDGAC_28980 - HNH endonuclease, at 5,533,103 to 5,533,468
_28980
Position (kb) 5532
5533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5531.117 kb on + strand, within JDDGAC_28960 at 5531.184 kb on - strand, within JDDGAC_28960 at 5531.310 kb on - strand, within JDDGAC_28960 at 5531.331 kb on + strand, within JDDGAC_28960 at 5531.331 kb on + strand, within JDDGAC_28960 at 5531.376 kb on - strand at 5531.379 kb on + strand at 5531.380 kb on - strand at 5531.445 kb on + strand at 5531.446 kb on - strand at 5531.477 kb on + strand at 5531.549 kb on + strand at 5531.549 kb on + strand at 5531.608 kb on + strand at 5531.631 kb on - strand at 5531.688 kb on + strand, within JDDGAC_28965 at 5531.830 kb on + strand, within JDDGAC_28965 at 5531.851 kb on + strand, within JDDGAC_28965 at 5531.851 kb on + strand, within JDDGAC_28965 at 5531.852 kb on - strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.887 kb on + strand, within JDDGAC_28965 at 5531.888 kb on - strand, within JDDGAC_28965 at 5531.896 kb on + strand, within JDDGAC_28965 at 5531.897 kb on - strand, within JDDGAC_28965 at 5531.915 kb on - strand, within JDDGAC_28965 at 5531.915 kb on - strand, within JDDGAC_28965 at 5531.948 kb on + strand, within JDDGAC_28965 at 5531.948 kb on + strand, within JDDGAC_28965 at 5531.949 kb on - strand, within JDDGAC_28965 at 5532.066 kb on + strand, within JDDGAC_28965 at 5532.270 kb on + strand, within JDDGAC_28970 at 5532.369 kb on + strand at 5532.370 kb on - strand at 5532.389 kb on + strand at 5532.390 kb on - strand at 5532.413 kb on - strand at 5532.413 kb on - strand at 5532.413 kb on - strand at 5532.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 5,531,117 + JDDGAC_28960 0.31 -2.5 5,531,184 - JDDGAC_28960 0.47 -1.7 5,531,310 - JDDGAC_28960 0.75 +1.2 5,531,331 + JDDGAC_28960 0.80 +0.7 5,531,331 + JDDGAC_28960 0.80 -0.6 5,531,376 - +1.0 5,531,379 + -3.1 5,531,380 - +2.5 5,531,445 + +0.7 5,531,446 - -1.7 5,531,477 + -0.9 5,531,549 + +1.6 5,531,549 + -1.8 5,531,608 + -3.1 5,531,631 - -1.8 5,531,688 + JDDGAC_28965 0.14 -0.1 5,531,830 + JDDGAC_28965 0.42 +0.6 5,531,851 + JDDGAC_28965 0.46 -1.5 5,531,851 + JDDGAC_28965 0.46 +1.3 5,531,852 - JDDGAC_28965 0.47 -0.2 5,531,887 + JDDGAC_28965 0.54 +1.7 5,531,887 + JDDGAC_28965 0.54 -2.2 5,531,887 + JDDGAC_28965 0.54 +0.1 5,531,888 - JDDGAC_28965 0.54 -0.9 5,531,896 + JDDGAC_28965 0.55 -0.4 5,531,897 - JDDGAC_28965 0.56 -0.2 5,531,915 - JDDGAC_28965 0.59 -1.4 5,531,915 - JDDGAC_28965 0.59 -1.5 5,531,948 + JDDGAC_28965 0.66 -1.7 5,531,948 + JDDGAC_28965 0.66 -0.8 5,531,949 - JDDGAC_28965 0.66 -0.1 5,532,066 + JDDGAC_28965 0.90 +1.2 5,532,270 + JDDGAC_28970 0.60 -1.0 5,532,369 + +0.2 5,532,370 - -0.3 5,532,389 + -0.0 5,532,390 - +0.4 5,532,413 - +0.0 5,532,413 - -1.7 5,532,413 - -0.4 5,532,415 - -0.9
Or see this region's nucleotide sequence