Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28875 and JDDGAC_28880 are separated by 74 nucleotides JDDGAC_28880 and ninG overlap by 1 nucleotides ninG and JDDGAC_28890 overlap by 4 nucleotides
JDDGAC_28875: JDDGAC_28875 - phage antirepressor Ant, at 5,521,561 to 5,522,325
_28875
JDDGAC_28880: JDDGAC_28880 - DNA-binding protein, at 5,522,400 to 5,523,122
_28880
JDDGAC_28885: ninG - Protein ninG, at 5,523,122 to 5,523,727
ninG
JDDGAC_28890: JDDGAC_28890 - Serine/threonine-protein phosphatase, at 5,523,724 to 5,524,395
_28890
Position (kb) 5522
5523
5524 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5521.407 kb on + strand at 5521.407 kb on + strand at 5521.428 kb on + strand at 5521.533 kb on + strand at 5521.534 kb on - strand at 5521.536 kb on + strand at 5521.570 kb on - strand at 5521.669 kb on - strand, within JDDGAC_28875 at 5521.698 kb on - strand, within JDDGAC_28875 at 5521.698 kb on - strand, within JDDGAC_28875 at 5521.796 kb on + strand, within JDDGAC_28875 at 5521.797 kb on - strand, within JDDGAC_28875 at 5521.801 kb on - strand, within JDDGAC_28875 at 5521.826 kb on + strand, within JDDGAC_28875 at 5521.857 kb on - strand, within JDDGAC_28875 at 5521.984 kb on + strand, within JDDGAC_28875 at 5522.080 kb on + strand, within JDDGAC_28875 at 5522.116 kb on + strand, within JDDGAC_28875 at 5522.127 kb on - strand, within JDDGAC_28875 at 5522.173 kb on + strand, within JDDGAC_28875 at 5522.185 kb on + strand, within JDDGAC_28875 at 5522.185 kb on + strand, within JDDGAC_28875 at 5522.185 kb on + strand, within JDDGAC_28875 at 5522.185 kb on + strand, within JDDGAC_28875 at 5522.186 kb on - strand, within JDDGAC_28875 at 5522.217 kb on + strand, within JDDGAC_28875 at 5522.217 kb on + strand, within JDDGAC_28875 at 5522.234 kb on + strand, within JDDGAC_28875 at 5522.238 kb on + strand, within JDDGAC_28875 at 5522.238 kb on + strand, within JDDGAC_28875 at 5522.239 kb on - strand, within JDDGAC_28875 at 5522.242 kb on + strand, within JDDGAC_28875 at 5522.338 kb on + strand at 5522.417 kb on + strand at 5522.417 kb on + strand at 5522.417 kb on + strand at 5522.593 kb on + strand, within JDDGAC_28880 at 5522.802 kb on - strand, within JDDGAC_28880 at 5522.802 kb on - strand, within JDDGAC_28880 at 5522.962 kb on - strand, within JDDGAC_28880 at 5522.964 kb on - strand, within JDDGAC_28880 at 5522.964 kb on - strand, within JDDGAC_28880 at 5523.006 kb on - strand, within JDDGAC_28880 at 5523.082 kb on + strand at 5523.120 kb on + strand at 5523.242 kb on - strand, within ninG at 5523.511 kb on + strand, within ninG
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 5,521,407 + -1.4 5,521,407 + -2.2 5,521,428 + -1.6 5,521,533 + -0.1 5,521,534 - +0.8 5,521,536 + -0.2 5,521,570 - +0.5 5,521,669 - JDDGAC_28875 0.14 -1.4 5,521,698 - JDDGAC_28875 0.18 +0.2 5,521,698 - JDDGAC_28875 0.18 +0.1 5,521,796 + JDDGAC_28875 0.31 -0.2 5,521,797 - JDDGAC_28875 0.31 +1.0 5,521,801 - JDDGAC_28875 0.31 +0.8 5,521,826 + JDDGAC_28875 0.35 -0.2 5,521,857 - JDDGAC_28875 0.39 +0.2 5,521,984 + JDDGAC_28875 0.55 +0.3 5,522,080 + JDDGAC_28875 0.68 -2.0 5,522,116 + JDDGAC_28875 0.73 -0.8 5,522,127 - JDDGAC_28875 0.74 +0.1 5,522,173 + JDDGAC_28875 0.80 +0.9 5,522,185 + JDDGAC_28875 0.82 -0.9 5,522,185 + JDDGAC_28875 0.82 +1.2 5,522,185 + JDDGAC_28875 0.82 +0.5 5,522,185 + JDDGAC_28875 0.82 -2.1 5,522,186 - JDDGAC_28875 0.82 -0.3 5,522,217 + JDDGAC_28875 0.86 +0.6 5,522,217 + JDDGAC_28875 0.86 +0.7 5,522,234 + JDDGAC_28875 0.88 +1.0 5,522,238 + JDDGAC_28875 0.88 +0.7 5,522,238 + JDDGAC_28875 0.88 +0.7 5,522,239 - JDDGAC_28875 0.89 +1.3 5,522,242 + JDDGAC_28875 0.89 +0.0 5,522,338 + +1.7 5,522,417 + -0.4 5,522,417 + -0.4 5,522,417 + -0.8 5,522,593 + JDDGAC_28880 0.27 -1.0 5,522,802 - JDDGAC_28880 0.56 -1.7 5,522,802 - JDDGAC_28880 0.56 -1.6 5,522,962 - JDDGAC_28880 0.78 -0.5 5,522,964 - JDDGAC_28880 0.78 -0.6 5,522,964 - JDDGAC_28880 0.78 -0.2 5,523,006 - JDDGAC_28880 0.84 +0.0 5,523,082 + -1.1 5,523,120 + -0.8 5,523,242 - ninG JDDGAC_28885 0.20 +2.0 5,523,511 + ninG JDDGAC_28885 0.64 -0.7
Or see this region's nucleotide sequence