Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt perB and gndA are separated by 200 nucleotides
JDDGAC_28575: perB - GDP-perosamine N-acetyltransferase, at 5,485,039 to 5,485,704
perB
JDDGAC_28580: gndA - NADP-dependent phosphogluconate dehydrogenase, at 5,485,905 to 5,487,311
gndA
Position (kb) 5485
5486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5484.711 kb on + strand at 5484.782 kb on + strand at 5484.830 kb on - strand at 5484.926 kb on + strand at 5485.319 kb on + strand, within perB at 5485.353 kb on + strand, within perB at 5485.353 kb on + strand, within perB at 5485.510 kb on + strand, within perB at 5485.584 kb on + strand, within perB at 5485.607 kb on + strand, within perB at 5485.698 kb on + strand at 5485.809 kb on + strand at 5485.853 kb on + strand at 5485.983 kb on + strand at 5485.984 kb on - strand at 5485.985 kb on + strand at 5486.064 kb on + strand, within gndA at 5486.065 kb on - strand, within gndA at 5486.067 kb on + strand, within gndA at 5486.067 kb on + strand, within gndA at 5486.153 kb on + strand, within gndA at 5486.154 kb on - strand, within gndA at 5486.208 kb on - strand, within gndA at 5486.211 kb on - strand, within gndA at 5486.264 kb on + strand, within gndA at 5486.356 kb on + strand, within gndA at 5486.418 kb on + strand, within gndA at 5486.418 kb on + strand, within gndA at 5486.418 kb on + strand, within gndA at 5486.418 kb on + strand, within gndA at 5486.419 kb on - strand, within gndA at 5486.445 kb on + strand, within gndA at 5486.505 kb on + strand, within gndA at 5486.506 kb on - strand, within gndA at 5486.506 kb on - strand, within gndA at 5486.607 kb on - strand, within gndA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 5,484,711 + +1.5 5,484,782 + -2.2 5,484,830 - -1.0 5,484,926 + +0.7 5,485,319 + perB JDDGAC_28575 0.42 -2.2 5,485,353 + perB JDDGAC_28575 0.47 -3.2 5,485,353 + perB JDDGAC_28575 0.47 -2.6 5,485,510 + perB JDDGAC_28575 0.71 -4.0 5,485,584 + perB JDDGAC_28575 0.82 -1.0 5,485,607 + perB JDDGAC_28575 0.85 -0.8 5,485,698 + -0.8 5,485,809 + -0.1 5,485,853 + -0.4 5,485,983 + +0.5 5,485,984 - -1.4 5,485,985 + +0.2 5,486,064 + gndA JDDGAC_28580 0.11 +0.2 5,486,065 - gndA JDDGAC_28580 0.11 -0.5 5,486,067 + gndA JDDGAC_28580 0.12 -0.1 5,486,067 + gndA JDDGAC_28580 0.12 -0.4 5,486,153 + gndA JDDGAC_28580 0.18 +1.1 5,486,154 - gndA JDDGAC_28580 0.18 -0.2 5,486,208 - gndA JDDGAC_28580 0.22 -1.1 5,486,211 - gndA JDDGAC_28580 0.22 -0.4 5,486,264 + gndA JDDGAC_28580 0.26 -1.4 5,486,356 + gndA JDDGAC_28580 0.32 -0.0 5,486,418 + gndA JDDGAC_28580 0.36 -1.7 5,486,418 + gndA JDDGAC_28580 0.36 +0.4 5,486,418 + gndA JDDGAC_28580 0.36 +0.7 5,486,418 + gndA JDDGAC_28580 0.36 +5.2 5,486,419 - gndA JDDGAC_28580 0.37 +0.5 5,486,445 + gndA JDDGAC_28580 0.38 +1.2 5,486,505 + gndA JDDGAC_28580 0.43 +0.5 5,486,506 - gndA JDDGAC_28580 0.43 +0.8 5,486,506 - gndA JDDGAC_28580 0.43 -0.1 5,486,607 - gndA JDDGAC_28580 0.50 -0.2
Or see this region's nucleotide sequence