Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehP and JDDGAC_28030 overlap by 8 nucleotides JDDGAC_28030 and JDDGAC_28035 are separated by 18 nucleotides
JDDGAC_28025: yehP - Uncharacterized protein YehP, at 5,369,135 to 5,370,271
yehP
JDDGAC_28030: JDDGAC_28030 - Protein, at 5,370,264 to 5,370,995
_28030
JDDGAC_28035: JDDGAC_28035 - Protein, at 5,371,014 to 5,372,543
_28035
Position (kb) 5370
5371 Strain fitness (log2 ratio) -1
0
1
2 at 5369.457 kb on - strand, within yehP at 5369.659 kb on + strand, within yehP at 5369.679 kb on + strand, within yehP at 5369.680 kb on - strand, within yehP at 5369.761 kb on + strand, within yehP at 5369.762 kb on - strand, within yehP at 5369.762 kb on - strand, within yehP at 5369.941 kb on + strand, within yehP at 5369.941 kb on + strand, within yehP at 5369.942 kb on - strand, within yehP at 5369.942 kb on - strand, within yehP at 5369.942 kb on - strand, within yehP at 5370.087 kb on - strand, within yehP at 5370.159 kb on - strand at 5370.397 kb on + strand, within JDDGAC_28030 at 5370.648 kb on - strand, within JDDGAC_28030 at 5370.790 kb on - strand, within JDDGAC_28030 at 5370.790 kb on - strand, within JDDGAC_28030 at 5370.907 kb on - strand, within JDDGAC_28030 at 5370.921 kb on + strand, within JDDGAC_28030 at 5370.945 kb on - strand at 5370.970 kb on + strand at 5370.971 kb on - strand at 5370.972 kb on + strand at 5370.973 kb on - strand at 5371.023 kb on + strand at 5371.026 kb on + strand at 5371.045 kb on - strand at 5371.140 kb on + strand at 5371.141 kb on - strand at 5371.141 kb on - strand at 5371.225 kb on - strand, within JDDGAC_28035 at 5371.281 kb on + strand, within JDDGAC_28035 at 5371.282 kb on - strand, within JDDGAC_28035 at 5371.303 kb on - strand, within JDDGAC_28035 at 5371.318 kb on - strand, within JDDGAC_28035 at 5371.349 kb on + strand, within JDDGAC_28035 at 5371.365 kb on - strand, within JDDGAC_28035 at 5371.365 kb on - strand, within JDDGAC_28035 at 5371.365 kb on - strand, within JDDGAC_28035 at 5371.439 kb on + strand, within JDDGAC_28035 at 5371.440 kb on - strand, within JDDGAC_28035 at 5371.440 kb on - strand, within JDDGAC_28035 at 5371.483 kb on - strand, within JDDGAC_28035 at 5371.491 kb on + strand, within JDDGAC_28035 at 5371.611 kb on + strand, within JDDGAC_28035 at 5371.612 kb on - strand, within JDDGAC_28035 at 5371.834 kb on + strand, within JDDGAC_28035 at 5371.846 kb on + strand, within JDDGAC_28035 at 5371.974 kb on - strand, within JDDGAC_28035
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 5,369,457 - yehP JDDGAC_28025 0.28 +1.4 5,369,659 + yehP JDDGAC_28025 0.46 -0.3 5,369,679 + yehP JDDGAC_28025 0.48 -0.8 5,369,680 - yehP JDDGAC_28025 0.48 -0.0 5,369,761 + yehP JDDGAC_28025 0.55 -0.2 5,369,762 - yehP JDDGAC_28025 0.55 -0.5 5,369,762 - yehP JDDGAC_28025 0.55 -0.1 5,369,941 + yehP JDDGAC_28025 0.71 +1.7 5,369,941 + yehP JDDGAC_28025 0.71 -1.2 5,369,942 - yehP JDDGAC_28025 0.71 +1.3 5,369,942 - yehP JDDGAC_28025 0.71 -0.1 5,369,942 - yehP JDDGAC_28025 0.71 +0.4 5,370,087 - yehP JDDGAC_28025 0.84 -1.4 5,370,159 - +2.4 5,370,397 + JDDGAC_28030 0.18 -0.9 5,370,648 - JDDGAC_28030 0.52 -1.4 5,370,790 - JDDGAC_28030 0.72 +0.2 5,370,790 - JDDGAC_28030 0.72 -0.6 5,370,907 - JDDGAC_28030 0.88 -0.9 5,370,921 + JDDGAC_28030 0.90 +0.0 5,370,945 - -0.5 5,370,970 + +0.7 5,370,971 - -0.1 5,370,972 + -0.3 5,370,973 - +0.1 5,371,023 + -0.5 5,371,026 + -0.7 5,371,045 - -0.5 5,371,140 + +1.7 5,371,141 - -0.4 5,371,141 - -0.6 5,371,225 - JDDGAC_28035 0.14 +1.8 5,371,281 + JDDGAC_28035 0.17 +1.6 5,371,282 - JDDGAC_28035 0.18 +1.2 5,371,303 - JDDGAC_28035 0.19 -0.8 5,371,318 - JDDGAC_28035 0.20 -0.8 5,371,349 + JDDGAC_28035 0.22 +0.3 5,371,365 - JDDGAC_28035 0.23 +0.0 5,371,365 - JDDGAC_28035 0.23 +0.6 5,371,365 - JDDGAC_28035 0.23 +0.5 5,371,439 + JDDGAC_28035 0.28 +1.2 5,371,440 - JDDGAC_28035 0.28 +1.4 5,371,440 - JDDGAC_28035 0.28 -0.0 5,371,483 - JDDGAC_28035 0.31 -1.6 5,371,491 + JDDGAC_28035 0.31 +0.7 5,371,611 + JDDGAC_28035 0.39 -0.3 5,371,612 - JDDGAC_28035 0.39 +0.8 5,371,834 + JDDGAC_28035 0.54 -1.4 5,371,846 + JDDGAC_28035 0.54 +1.7 5,371,974 - JDDGAC_28035 0.63 -0.0
Or see this region's nucleotide sequence