Strain Fitness in Escherichia coli ECRC98 around JDDGAC_27045

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_27040 and JDDGAC_27045 are separated by 178 nucleotidesJDDGAC_27045 and lysR are separated by 153 nucleotides JDDGAC_27040: JDDGAC_27040 - hypothetical protein, at 5,181,874 to 5,182,944 _27040 JDDGAC_27045: JDDGAC_27045 - hypothetical protein, at 5,183,123 to 5,183,254 _27045 JDDGAC_27050: lysR - transcriptional regulator, at 5,183,408 to 5,184,286 lysR Position (kb) 5183 5184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5182.130 kb on - strand, within JDDGAC_27040at 5182.935 kb on + strandat 5183.084 kb on - strandat 5183.232 kb on + strand, within JDDGAC_27045at 5183.279 kb on + strandat 5183.279 kb on + strandat 5183.281 kb on + strandat 5183.345 kb on - strandat 5183.346 kb on + strandat 5183.349 kb on + strandat 5183.350 kb on - strandat 5183.355 kb on + strandat 5183.356 kb on - strandat 5183.404 kb on + strandat 5183.454 kb on - strandat 5183.512 kb on - strand, within lysRat 5183.790 kb on - strand, within lysRat 5183.971 kb on + strand, within lysRat 5183.971 kb on + strand, within lysRat 5183.972 kb on - strand, within lysRat 5184.050 kb on + strand, within lysRat 5184.051 kb on - strand, within lysRat 5184.127 kb on + strand, within lysRat 5184.146 kb on + strand, within lysR

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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5,182,130 - JDDGAC_27040 0.24 +0.4
5,182,935 + -1.5
5,183,084 - +1.9
5,183,232 + JDDGAC_27045 0.83 -2.7
5,183,279 + -2.1
5,183,279 + -1.6
5,183,281 + -1.3
5,183,345 - +0.4
5,183,346 + -0.5
5,183,349 + +3.4
5,183,350 - -1.9
5,183,355 + -1.2
5,183,356 - +0.1
5,183,404 + -2.3
5,183,454 - -0.1
5,183,512 - lysR JDDGAC_27050 0.12 +0.5
5,183,790 - lysR JDDGAC_27050 0.43 -1.2
5,183,971 + lysR JDDGAC_27050 0.64 +0.7
5,183,971 + lysR JDDGAC_27050 0.64 +0.4
5,183,972 - lysR JDDGAC_27050 0.64 -0.1
5,184,050 + lysR JDDGAC_27050 0.73 -0.8
5,184,051 - lysR JDDGAC_27050 0.73 -0.7
5,184,127 + lysR JDDGAC_27050 0.82 +1.3
5,184,146 + lysR JDDGAC_27050 0.84 -1.0

Or see this region's nucleotide sequence