Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25085

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnc and era overlap by 4 nucleotidesera and recO are separated by 11 nucleotidesrecO and pdxJ are separated by 11 nucleotidespdxJ and acpS overlap by 1 nucleotides JDDGAC_25075: rnc - ribonuclease III, at 4,794,980 to 4,795,660 rnc JDDGAC_25080: era - GTPase Era, at 4,795,657 to 4,796,562 era JDDGAC_25085: recO - DNA repair protein RecO, at 4,796,574 to 4,797,302 recO JDDGAC_25090: pdxJ - pyridoxine 5'-phosphate synthase, at 4,797,314 to 4,798,045 pdxJ JDDGAC_25095: acpS - Holo-[acyl-carrier-protein] synthase, at 4,798,045 to 4,798,425 acpS Position (kb) 4796 4797 4798Strain fitness (log2 ratio) -2 -1 0 1at 4796.546 kb on - strandat 4796.844 kb on + strand, within recOat 4796.845 kb on - strand, within recOat 4796.845 kb on - strand, within recOat 4796.910 kb on + strand, within recOat 4796.911 kb on - strand, within recOat 4797.063 kb on + strand, within recOat 4797.213 kb on - strand, within recOat 4797.266 kb on + strandat 4797.266 kb on + strandat 4797.294 kb on + strandat 4797.294 kb on + strandat 4797.294 kb on + strandat 4797.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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4,796,546 - +0.9
4,796,844 + recO JDDGAC_25085 0.37 -0.6
4,796,845 - recO JDDGAC_25085 0.37 -0.3
4,796,845 - recO JDDGAC_25085 0.37 -0.3
4,796,910 + recO JDDGAC_25085 0.46 -1.3
4,796,911 - recO JDDGAC_25085 0.46 -0.6
4,797,063 + recO JDDGAC_25085 0.67 -2.7
4,797,213 - recO JDDGAC_25085 0.88 -1.9
4,797,266 + +0.7
4,797,266 + +0.3
4,797,294 + +0.6
4,797,294 + +1.5
4,797,294 + +1.2
4,797,324 + -0.7

Or see this region's nucleotide sequence