Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24045

Experiment: WM_Bas41

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas41
4,611,009	+	cysI	JDDGAC_24040	0.47	-0.7
4,611,053	+	cysI	JDDGAC_24040	0.49	-1.0
4,611,054	-	cysI	JDDGAC_24040	0.49	+0.4
4,611,219	+	cysI	JDDGAC_24040	0.59	-0.5
4,611,245	+	cysI	JDDGAC_24040	0.60	-2.6
4,611,592	+	cysI	JDDGAC_24040	0.81	+0.8
4,611,624	-	cysI	JDDGAC_24040	0.82	+1.5
4,611,637	+	cysI	JDDGAC_24040	0.83	-0.9
4,611,814	+				+0.3
4,611,942	-				-1.6
4,611,950	+				-0.2
4,611,996	+				-0.7
4,611,997	-				+0.7
4,611,997	-				+1.6
4,612,107	-	cysH	JDDGAC_24045	0.15	-0.3
4,612,139	-	cysH	JDDGAC_24045	0.19	-1.4
4,612,139	-	cysH	JDDGAC_24045	0.19	-0.9
4,612,139	-	cysH	JDDGAC_24045	0.19	-1.3
4,612,142	+	cysH	JDDGAC_24045	0.20	-2.2
4,612,143	-	cysH	JDDGAC_24045	0.20	-1.6
4,612,143	-	cysH	JDDGAC_24045	0.20	-0.5
4,612,143	-	cysH	JDDGAC_24045	0.20	-1.7
4,612,438	-	cysH	JDDGAC_24045	0.60	+0.3
4,612,566	-	cysH	JDDGAC_24045	0.77	-1.7
4,612,566	-	cysH	JDDGAC_24045	0.77	-2.8
4,612,567	+	cysH	JDDGAC_24045	0.78	-1.0
4,612,568	-	cysH	JDDGAC_24045	0.78	-1.9
4,612,573	+	cysH	JDDGAC_24045	0.78	+0.0
4,612,574	-	cysH	JDDGAC_24045	0.79	-1.0
4,612,644	+	cysH	JDDGAC_24045	0.88	-0.8
4,612,645	-	cysH	JDDGAC_24045	0.88	-1.1
4,612,730	-				+0.6
4,612,841	-				+1.4
4,612,842	+				+2.9
4,612,843	-				+0.6
4,612,843	-				+1.7
4,612,919	+				-1.8
4,612,926	-				+0.2
4,612,926	-				+0.9
4,612,952	+				-0.8
4,613,008	-				-0.0
4,613,008	-				-1.6
4,613,026	+	hokG	JDDGAC_24055	0.20	+0.2
4,613,026	+	hokG	JDDGAC_24055	0.20	+0.3
4,613,026	+	hokG	JDDGAC_24055	0.20	+0.7
4,613,026	+	hokG	JDDGAC_24055	0.20	+0.7
4,613,026	+	hokG	JDDGAC_24055	0.20	-0.1
4,613,027	-	hokG	JDDGAC_24055	0.21	+0.0
4,613,027	-	hokG	JDDGAC_24055	0.21	-0.7
4,613,029	+	hokG	JDDGAC_24055	0.22	+1.5
4,613,030	-	hokG	JDDGAC_24055	0.23	+0.7
4,613,030	-	hokG	JDDGAC_24055	0.23	-0.3
4,613,030	-	hokG	JDDGAC_24055	0.23	-0.7
4,613,030	-	hokG	JDDGAC_24055	0.23	+0.2
4,613,039	+	hokG	JDDGAC_24055	0.29	-0.7
4,613,040	-	hokG	JDDGAC_24055	0.29	-0.2
4,613,044	+	hokG	JDDGAC_24055	0.32	+0.1
4,613,044	+	hokG	JDDGAC_24055	0.32	+0.5
4,613,090	+	hokG	JDDGAC_24055	0.62	-0.8
4,613,105	+	hokG	JDDGAC_24055	0.72	-0.9
4,613,115	-	hokG	JDDGAC_24055	0.78	-1.2
4,613,131	-	hokG	JDDGAC_24055	0.89	-2.3
4,613,145	+				+0.0
4,613,146	-				-0.2
4,613,338	+				+0.1
4,613,486	+				-0.2
4,613,490	+				+0.1
4,613,538	+				-0.7
4,613,633	+	cas3	JDDGAC_24060	0.11	-2.9
4,613,679	-	cas3	JDDGAC_24060	0.13	-2.7
4,613,726	+	cas3	JDDGAC_24060	0.14	-1.1
4,613,726	+	cas3	JDDGAC_24060	0.14	+0.5
4,613,727	-	cas3	JDDGAC_24060	0.14	-1.8
4,613,730	+	cas3	JDDGAC_24060	0.14	+0.9