Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18185

Experiment: WM_Bas41

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas41
3,450,039	+	rffC	JDDGAC_18175	0.88	-2.0
3,450,039	+	rffC	JDDGAC_18175	0.88	-1.0
3,450,039	+	rffC	JDDGAC_18175	0.88	-1.3
3,450,088	+				-1.3
3,450,100	-				-0.9
3,450,122	+				-0.3
3,450,266	+	rfbA	JDDGAC_18180	0.19	-1.3
3,450,367	-	rfbA	JDDGAC_18180	0.31	-4.2
3,450,367	-	rfbA	JDDGAC_18180	0.31	-1.2
3,450,430	-	rfbA	JDDGAC_18180	0.38	-3.4
3,450,456	+	rfbA	JDDGAC_18180	0.41	-0.2
3,450,457	-	rfbA	JDDGAC_18180	0.41	-1.7
3,450,457	-	rfbA	JDDGAC_18180	0.41	-3.0
3,450,457	-	rfbA	JDDGAC_18180	0.41	-1.6
3,450,515	-	rfbA	JDDGAC_18180	0.48	-2.5
3,450,707	-	rfbA	JDDGAC_18180	0.69	-2.5
3,450,798	+	rfbA	JDDGAC_18180	0.80	-2.3
3,450,805	+	rfbA	JDDGAC_18180	0.80	-0.9
3,450,806	-	rfbA	JDDGAC_18180	0.81	-5.3
3,450,806	-	rfbA	JDDGAC_18180	0.81	-0.9
3,450,873	+	rfbA	JDDGAC_18180	0.88	-3.2
3,450,873	+	rfbA	JDDGAC_18180	0.88	-2.1
3,450,873	+	rfbA	JDDGAC_18180	0.88	-1.7
3,450,873	+	rfbA	JDDGAC_18180	0.88	-1.5
3,450,873	+	rfbA	JDDGAC_18180	0.88	-0.8
3,450,874	-	rfbA	JDDGAC_18180	0.88	-2.5
3,450,887	-	rfbA	JDDGAC_18180	0.90	-3.6
3,450,891	+				-2.5
3,450,964	+				-2.5
3,450,967	+				-1.6
3,450,968	-				-3.5
3,450,968	-				-2.2
3,451,072	-				+0.9
3,451,161	+	rffG	JDDGAC_18185	0.16	-2.3
3,451,316	-	rffG	JDDGAC_18185	0.30	-5.3
3,451,316	-	rffG	JDDGAC_18185	0.30	-3.0
3,451,317	+	rffG	JDDGAC_18185	0.30	-1.4
3,451,317	+	rffG	JDDGAC_18185	0.30	-3.2
3,451,353	+	rffG	JDDGAC_18185	0.34	-3.0
3,451,354	-	rffG	JDDGAC_18185	0.34	-2.5
3,451,380	+	rffG	JDDGAC_18185	0.36	-1.2
3,451,380	+	rffG	JDDGAC_18185	0.36	-1.7
3,451,415	+	rffG	JDDGAC_18185	0.39	-3.4
3,451,416	-	rffG	JDDGAC_18185	0.39	-4.2
3,451,491	+	rffG	JDDGAC_18185	0.46	+0.1
3,451,495	+	rffG	JDDGAC_18185	0.47	-2.2
3,451,513	+	rffG	JDDGAC_18185	0.49	-1.8
3,451,530	+	rffG	JDDGAC_18185	0.50	-2.6
3,451,530	+	rffG	JDDGAC_18185	0.50	-3.6
3,451,530	+	rffG	JDDGAC_18185	0.50	-3.9
3,451,531	-	rffG	JDDGAC_18185	0.50	+0.4
3,451,584	+	rffG	JDDGAC_18185	0.55	-2.0
3,451,603	-	rffG	JDDGAC_18185	0.57	-2.2
3,451,650	+	rffG	JDDGAC_18185	0.61	-1.2
3,451,651	-	rffG	JDDGAC_18185	0.61	-0.8
3,451,652	+	rffG	JDDGAC_18185	0.62	-3.0
3,451,653	-	rffG	JDDGAC_18185	0.62	-2.5
3,451,653	-	rffG	JDDGAC_18185	0.62	-2.1
3,451,653	-	rffG	JDDGAC_18185	0.62	-3.5
3,451,653	-	rffG	JDDGAC_18185	0.62	-1.4
3,451,653	-	rffG	JDDGAC_18185	0.62	-3.4
3,451,669	+	rffG	JDDGAC_18185	0.63	+0.5
3,451,670	-	rffG	JDDGAC_18185	0.63	-0.7
3,451,670	-	rffG	JDDGAC_18185	0.63	-1.5
3,451,670	-	rffG	JDDGAC_18185	0.63	+0.1
3,451,744	+	rffG	JDDGAC_18185	0.70	-2.0
3,451,744	+	rffG	JDDGAC_18185	0.70	-3.8
3,451,744	+	rffG	JDDGAC_18185	0.70	-2.1
3,451,744	+	rffG	JDDGAC_18185	0.70	-1.9
3,451,744	+	rffG	JDDGAC_18185	0.70	-1.5
3,451,745	-	rffG	JDDGAC_18185	0.70	-2.3
3,451,745	-	rffG	JDDGAC_18185	0.70	-2.9
3,451,746	+	rffG	JDDGAC_18185	0.70	-2.7
3,451,746	+	rffG	JDDGAC_18185	0.70	-2.2
3,451,746	+	rffG	JDDGAC_18185	0.70	+0.1
3,451,746	+	rffG	JDDGAC_18185	0.70	-3.9
3,451,747	-	rffG	JDDGAC_18185	0.70	-2.2
3,451,793	-	rffG	JDDGAC_18185	0.75	+0.6
3,451,793	-	rffG	JDDGAC_18185	0.75	-2.4
3,451,885	+	rffG	JDDGAC_18185	0.83	+0.5
3,452,003	-				-2.2
3,452,003	-				-0.2
3,452,004	+				-2.5
3,452,004	+				-2.2
3,452,004	+				-2.8
3,452,004	+				-0.2
3,452,005	-				-0.7
3,452,027	-				-0.0
3,452,046	-				-2.4
3,452,093	+				-0.6
3,452,093	+				+0.5
3,452,093	+				+0.3
3,452,094	-				+0.1
3,452,094	-				+0.7
3,452,136	+				+0.4
3,452,136	+				-0.0
3,452,137	-				-0.1
3,452,238	+	wecC	JDDGAC_18190	0.14	+1.5
3,452,472	+	wecC	JDDGAC_18190	0.32	+1.2
3,452,505	+	wecC	JDDGAC_18190	0.35	-0.6
3,452,562	+	wecC	JDDGAC_18190	0.40	+0.7
3,452,562	+	wecC	JDDGAC_18190	0.40	+1.2
3,452,563	-	wecC	JDDGAC_18190	0.40	+0.8
3,452,563	-	wecC	JDDGAC_18190	0.40	+0.1
3,452,646	+	wecC	JDDGAC_18190	0.46	+1.3
3,452,751	-	wecC	JDDGAC_18190	0.55	+0.8
3,452,787	+	wecC	JDDGAC_18190	0.57	+0.7
3,452,787	+	wecC	JDDGAC_18190	0.57	+0.2
3,452,787	+	wecC	JDDGAC_18190	0.57	+0.5
3,452,788	-	wecC	JDDGAC_18190	0.57	+0.6
3,452,788	-	wecC	JDDGAC_18190	0.57	-1.8
3,453,035	+	wecC	JDDGAC_18190	0.77	-0.1
3,453,035	+	wecC	JDDGAC_18190	0.77	+1.7
3,453,035	+	wecC	JDDGAC_18190	0.77	+0.7
3,453,035	+	wecC	JDDGAC_18190	0.77	+0.3
3,453,036	-	wecC	JDDGAC_18190	0.77	+1.4
3,453,042	+	wecC	JDDGAC_18190	0.78	+0.8
3,453,042	+	wecC	JDDGAC_18190	0.78	+0.5