Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11200

Experiment: WM_Bas41

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas41
2,013,174	-	cstA	JDDGAC_11195	0.67	+2.1
2,013,174	-	cstA	JDDGAC_11195	0.67	-0.1
2,013,248	-	cstA	JDDGAC_11195	0.70	+1.5
2,013,248	-	cstA	JDDGAC_11195	0.70	-1.8
2,013,292	+	cstA	JDDGAC_11195	0.72	-0.4
2,013,292	+	cstA	JDDGAC_11195	0.72	-0.7
2,013,293	-	cstA	JDDGAC_11195	0.72	+2.6
2,013,342	+	cstA	JDDGAC_11195	0.75	+0.1
2,013,354	-	cstA	JDDGAC_11195	0.75	-0.1
2,013,536	-	cstA	JDDGAC_11195	0.84	+0.6
2,013,634	+	cstA	JDDGAC_11195	0.89	+0.5
2,013,635	-	cstA	JDDGAC_11195	0.89	-0.3
2,013,708	-				-1.8
2,013,709	+				-0.4
2,013,710	-				+1.0
2,013,743	+				-0.3
2,013,744	-				-1.5
2,013,803	+				+0.6
2,013,805	+				+1.6
2,013,805	+				-1.5
2,013,828	+				-0.0
2,013,853	+				-2.8
2,013,854	-				+0.2
2,013,872	+				-2.1
2,013,920	-				+0.1
2,013,921	+				-1.5
2,013,933	-				+0.7
2,013,958	+				-1.3
2,013,987	+				+0.3
2,014,040	-				-0.1
2,014,040	-				+0.0
2,014,040	-				-2.0
2,014,212	-	entH	JDDGAC_11200	0.38	-1.0
2,014,253	+	entH	JDDGAC_11200	0.48	-0.8
2,014,383	-	entH	JDDGAC_11200	0.80	-0.1
2,014,384	+	entH	JDDGAC_11200	0.80	-0.8
2,014,470	+				+1.5
2,014,470	+				+0.2
2,014,471	-				-2.7
2,014,471	-				-0.5
2,014,708	+	entA	JDDGAC_11205	0.32	+0.2
2,014,795	+	entA	JDDGAC_11205	0.44	+1.2
2,014,795	+	entA	JDDGAC_11205	0.44	-0.0
2,014,796	-	entA	JDDGAC_11205	0.44	+0.2
2,014,796	-	entA	JDDGAC_11205	0.44	-0.4
2,015,015	+	entA	JDDGAC_11205	0.73	+1.2
2,015,015	+	entA	JDDGAC_11205	0.73	+1.8
2,015,030	+	entA	JDDGAC_11205	0.75	-0.0
2,015,066	+	entA	JDDGAC_11205	0.80	-1.6
2,015,066	+	entA	JDDGAC_11205	0.80	-1.0
2,015,067	-	entA	JDDGAC_11205	0.80	+0.2
2,015,067	-	entA	JDDGAC_11205	0.80	+0.7
2,015,067	-	entA	JDDGAC_11205	0.80	-1.5
2,015,067	-	entA	JDDGAC_11205	0.80	+0.5
2,015,236	+				+0.8
2,015,352	-	entB	JDDGAC_11210	0.16	-1.9
2,015,456	-	entB	JDDGAC_11210	0.28	+0.1