Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nagB and nagA are separated by 59 nucleotides nagA and nagC are separated by 8 nucleotides
JDDGAC_10810: nagB - glucosamine-6-phosphate deaminase, at 1,941,711 to 1,942,511
nagB
JDDGAC_10815: nagA - N-acetylglucosamine-6-phosphate deacetylase, at 1,942,571 to 1,943,719
nagA
JDDGAC_10820: nagC - DNA-binding transcriptional regulator NagC, at 1,943,728 to 1,944,948
nagC
Position (kb) 1942
1943
1944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1941.577 kb on + strand at 1941.577 kb on + strand at 1941.671 kb on - strand at 1941.856 kb on - strand, within nagB at 1941.856 kb on - strand, within nagB at 1941.899 kb on + strand, within nagB at 1941.900 kb on - strand, within nagB at 1941.931 kb on - strand, within nagB at 1941.975 kb on - strand, within nagB at 1942.139 kb on + strand, within nagB at 1942.149 kb on - strand, within nagB at 1942.236 kb on - strand, within nagB at 1942.283 kb on + strand, within nagB at 1942.376 kb on + strand, within nagB at 1942.574 kb on + strand at 1942.849 kb on + strand, within nagA at 1942.850 kb on - strand, within nagA at 1943.017 kb on + strand, within nagA at 1943.237 kb on + strand, within nagA at 1943.238 kb on - strand, within nagA at 1943.239 kb on + strand, within nagA at 1943.445 kb on + strand, within nagA at 1943.447 kb on + strand, within nagA at 1943.448 kb on - strand, within nagA at 1943.450 kb on + strand, within nagA at 1943.635 kb on + strand at 1943.640 kb on + strand at 1943.718 kb on - strand at 1943.728 kb on - strand at 1943.753 kb on + strand at 1943.757 kb on + strand at 1943.771 kb on + strand at 1944.141 kb on + strand, within nagC at 1944.226 kb on + strand, within nagC at 1944.238 kb on - strand, within nagC at 1944.285 kb on + strand, within nagC at 1944.286 kb on - strand, within nagC at 1944.340 kb on + strand, within nagC at 1944.341 kb on - strand, within nagC at 1944.529 kb on - strand, within nagC at 1944.624 kb on + strand, within nagC at 1944.625 kb on - strand, within nagC at 1944.714 kb on + strand, within nagC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,941,577 + -1.5 1,941,577 + -0.1 1,941,671 - -0.2 1,941,856 - nagB JDDGAC_10810 0.18 +1.1 1,941,856 - nagB JDDGAC_10810 0.18 +0.2 1,941,899 + nagB JDDGAC_10810 0.23 +0.6 1,941,900 - nagB JDDGAC_10810 0.24 +0.6 1,941,931 - nagB JDDGAC_10810 0.27 -0.1 1,941,975 - nagB JDDGAC_10810 0.33 -0.5 1,942,139 + nagB JDDGAC_10810 0.53 +1.5 1,942,149 - nagB JDDGAC_10810 0.55 +0.1 1,942,236 - nagB JDDGAC_10810 0.66 -3.3 1,942,283 + nagB JDDGAC_10810 0.71 +2.7 1,942,376 + nagB JDDGAC_10810 0.83 -0.9 1,942,574 + -1.7 1,942,849 + nagA JDDGAC_10815 0.24 -0.5 1,942,850 - nagA JDDGAC_10815 0.24 -2.1 1,943,017 + nagA JDDGAC_10815 0.39 -2.0 1,943,237 + nagA JDDGAC_10815 0.58 +0.6 1,943,238 - nagA JDDGAC_10815 0.58 -1.3 1,943,239 + nagA JDDGAC_10815 0.58 +2.4 1,943,445 + nagA JDDGAC_10815 0.76 -1.5 1,943,447 + nagA JDDGAC_10815 0.76 -2.1 1,943,448 - nagA JDDGAC_10815 0.76 +0.4 1,943,450 + nagA JDDGAC_10815 0.77 -0.8 1,943,635 + -1.8 1,943,640 + -2.7 1,943,718 - -2.6 1,943,728 - +0.9 1,943,753 + +0.7 1,943,757 + -0.0 1,943,771 + -0.9 1,944,141 + nagC JDDGAC_10820 0.34 -2.2 1,944,226 + nagC JDDGAC_10820 0.41 -1.0 1,944,238 - nagC JDDGAC_10820 0.42 -0.1 1,944,285 + nagC JDDGAC_10820 0.46 +0.4 1,944,286 - nagC JDDGAC_10820 0.46 +3.9 1,944,340 + nagC JDDGAC_10820 0.50 +1.0 1,944,341 - nagC JDDGAC_10820 0.50 +1.5 1,944,529 - nagC JDDGAC_10820 0.66 -1.1 1,944,624 + nagC JDDGAC_10820 0.73 +0.4 1,944,625 - nagC JDDGAC_10820 0.73 -1.9 1,944,714 + nagC JDDGAC_10820 0.81 -0.4
Or see this region's nucleotide sequence