Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07825

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07825 and JDDGAC_07830 are separated by 871 nucleotides JDDGAC_07825: JDDGAC_07825 - Membrane protein, at 1,355,283 to 1,355,954 _07825 JDDGAC_07830: JDDGAC_07830 - Hok/Gef family protein, at 1,356,826 to 1,356,966 _07830 Position (kb) 1355 1356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1354.301 kb on + strandat 1354.317 kb on + strandat 1354.378 kb on + strandat 1354.379 kb on - strandat 1354.390 kb on + strandat 1354.409 kb on - strandat 1354.409 kb on - strandat 1354.623 kb on + strandat 1354.729 kb on - strandat 1354.882 kb on - strandat 1354.928 kb on + strandat 1354.929 kb on - strandat 1354.929 kb on - strandat 1354.929 kb on - strandat 1355.088 kb on - strandat 1355.129 kb on - strandat 1355.276 kb on + strandat 1355.758 kb on + strand, within JDDGAC_07825at 1356.074 kb on - strandat 1356.408 kb on - strandat 1356.580 kb on + strandat 1356.580 kb on + strandat 1356.581 kb on - strandat 1356.581 kb on - strandat 1356.581 kb on - strandat 1356.581 kb on - strandat 1356.719 kb on - strandat 1356.901 kb on + strand, within JDDGAC_07830at 1356.901 kb on + strand, within JDDGAC_07830at 1356.902 kb on - strand, within JDDGAC_07830at 1356.935 kb on - strand, within JDDGAC_07830

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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1,354,301 + -2.0
1,354,317 + -0.7
1,354,378 + +1.0
1,354,379 - +0.4
1,354,390 + -0.2
1,354,409 - -1.6
1,354,409 - +0.5
1,354,623 + +1.1
1,354,729 - -0.1
1,354,882 - +0.9
1,354,928 + +1.4
1,354,929 - -2.1
1,354,929 - -1.0
1,354,929 - -3.2
1,355,088 - -0.2
1,355,129 - -2.2
1,355,276 + +1.1
1,355,758 + JDDGAC_07825 0.71 -2.8
1,356,074 - +0.2
1,356,408 - +0.2
1,356,580 + -0.5
1,356,580 + +0.4
1,356,581 - -1.9
1,356,581 - +0.4
1,356,581 - +0.4
1,356,581 - -0.9
1,356,719 - -3.2
1,356,901 + JDDGAC_07830 0.53 -0.7
1,356,901 + JDDGAC_07830 0.53 +2.3
1,356,902 - JDDGAC_07830 0.54 +0.0
1,356,935 - JDDGAC_07830 0.77 +1.0

Or see this region's nucleotide sequence