Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07640

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07625 and JDDGAC_07630 overlap by 4 nucleotidesJDDGAC_07630 and JDDGAC_07635 are separated by 53 nucleotidesJDDGAC_07635 and JDDGAC_07640 are separated by 39 nucleotidesJDDGAC_07640 and JDDGAC_07645 are separated by 88 nucleotides JDDGAC_07625: JDDGAC_07625 - IS66 transposase, at 1,322,740 to 1,322,829 _07625 JDDGAC_07630: JDDGAC_07630 - putative transposase of insertion sequence IS682, at 1,322,826 to 1,323,251 _07630 JDDGAC_07635: JDDGAC_07635 - Integrase catalytic domain-containing protein, at 1,323,305 to 1,323,553 _07635 JDDGAC_07640: JDDGAC_07640 - DNA-binding protein, at 1,323,593 to 1,323,976 _07640 JDDGAC_07645: JDDGAC_07645 - hypothetical protein, at 1,324,065 to 1,324,574 _07645 Position (kb) 1323 1324Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1322.676 kb on + strandat 1322.676 kb on + strandat 1322.746 kb on + strandat 1322.746 kb on + strandat 1322.769 kb on + strand, within JDDGAC_07625at 1322.770 kb on - strand, within JDDGAC_07625at 1323.016 kb on - strand, within JDDGAC_07630at 1323.016 kb on - strand, within JDDGAC_07630at 1323.025 kb on - strand, within JDDGAC_07630at 1323.073 kb on - strand, within JDDGAC_07630at 1323.073 kb on - strand, within JDDGAC_07630at 1323.075 kb on - strand, within JDDGAC_07630at 1323.188 kb on + strand, within JDDGAC_07630at 1323.243 kb on + strandat 1323.252 kb on - strandat 1323.255 kb on + strandat 1323.255 kb on + strandat 1323.256 kb on - strandat 1323.315 kb on - strandat 1323.329 kb on - strandat 1323.646 kb on - strand, within JDDGAC_07640at 1323.684 kb on + strand, within JDDGAC_07640at 1323.994 kb on - strandat 1324.130 kb on - strand, within JDDGAC_07645at 1324.130 kb on - strand, within JDDGAC_07645at 1324.198 kb on - strand, within JDDGAC_07645at 1324.198 kb on - strand, within JDDGAC_07645at 1324.221 kb on + strand, within JDDGAC_07645at 1324.280 kb on + strand, within JDDGAC_07645at 1324.281 kb on - strand, within JDDGAC_07645at 1324.312 kb on - strand, within JDDGAC_07645at 1324.348 kb on - strand, within JDDGAC_07645at 1324.350 kb on + strand, within JDDGAC_07645at 1324.351 kb on - strand, within JDDGAC_07645at 1324.382 kb on + strand, within JDDGAC_07645at 1324.383 kb on - strand, within JDDGAC_07645at 1324.383 kb on - strand, within JDDGAC_07645at 1324.394 kb on + strand, within JDDGAC_07645at 1324.450 kb on + strand, within JDDGAC_07645at 1324.451 kb on - strand, within JDDGAC_07645at 1324.655 kb on - strandat 1324.660 kb on - strandat 1324.759 kb on - strandat 1324.811 kb on - strandat 1324.813 kb on - strandat 1324.820 kb on - strandat 1324.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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1,322,676 + -0.8
1,322,676 + -2.5
1,322,746 + +0.7
1,322,746 + -0.8
1,322,769 + JDDGAC_07625 0.32 +0.2
1,322,770 - JDDGAC_07625 0.33 -1.6
1,323,016 - JDDGAC_07630 0.45 +3.0
1,323,016 - JDDGAC_07630 0.45 -0.4
1,323,025 - JDDGAC_07630 0.47 +0.1
1,323,073 - JDDGAC_07630 0.58 -0.4
1,323,073 - JDDGAC_07630 0.58 -0.5
1,323,075 - JDDGAC_07630 0.58 +1.4
1,323,188 + JDDGAC_07630 0.85 +1.0
1,323,243 + +1.0
1,323,252 - -0.4
1,323,255 + -0.5
1,323,255 + +0.2
1,323,256 - +1.4
1,323,315 - -1.6
1,323,329 - -0.5
1,323,646 - JDDGAC_07640 0.14 -1.3
1,323,684 + JDDGAC_07640 0.24 -1.2
1,323,994 - +0.1
1,324,130 - JDDGAC_07645 0.13 +0.3
1,324,130 - JDDGAC_07645 0.13 -2.0
1,324,198 - JDDGAC_07645 0.26 -0.1
1,324,198 - JDDGAC_07645 0.26 -0.4
1,324,221 + JDDGAC_07645 0.31 +0.6
1,324,280 + JDDGAC_07645 0.42 +0.5
1,324,281 - JDDGAC_07645 0.42 -1.1
1,324,312 - JDDGAC_07645 0.48 -2.4
1,324,348 - JDDGAC_07645 0.55 -0.3
1,324,350 + JDDGAC_07645 0.56 -1.2
1,324,351 - JDDGAC_07645 0.56 -1.2
1,324,382 + JDDGAC_07645 0.62 +0.8
1,324,383 - JDDGAC_07645 0.62 +0.7
1,324,383 - JDDGAC_07645 0.62 -1.4
1,324,394 + JDDGAC_07645 0.65 -0.8
1,324,450 + JDDGAC_07645 0.75 -0.2
1,324,451 - JDDGAC_07645 0.76 +0.4
1,324,655 - +0.3
1,324,660 - -0.7
1,324,759 - -0.0
1,324,811 - +0.5
1,324,813 - +0.4
1,324,820 - -0.7
1,324,969 - +0.0

Or see this region's nucleotide sequence