Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07625 and JDDGAC_07630 overlap by 4 nucleotides JDDGAC_07630 and JDDGAC_07635 are separated by 53 nucleotides JDDGAC_07635 and JDDGAC_07640 are separated by 39 nucleotides JDDGAC_07640 and JDDGAC_07645 are separated by 88 nucleotides
JDDGAC_07625: JDDGAC_07625 - IS66 transposase, at 1,322,740 to 1,322,829
_07625
JDDGAC_07630: JDDGAC_07630 - putative transposase of insertion sequence IS682, at 1,322,826 to 1,323,251
_07630
JDDGAC_07635: JDDGAC_07635 - Integrase catalytic domain-containing protein, at 1,323,305 to 1,323,553
_07635
JDDGAC_07640: JDDGAC_07640 - DNA-binding protein, at 1,323,593 to 1,323,976
_07640
JDDGAC_07645: JDDGAC_07645 - hypothetical protein, at 1,324,065 to 1,324,574
_07645
Position (kb)
1323
1324 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1322.676 kb on + strand at 1322.676 kb on + strand at 1322.746 kb on + strand at 1322.746 kb on + strand at 1322.769 kb on + strand, within JDDGAC_07625 at 1322.770 kb on - strand, within JDDGAC_07625 at 1323.016 kb on - strand, within JDDGAC_07630 at 1323.016 kb on - strand, within JDDGAC_07630 at 1323.025 kb on - strand, within JDDGAC_07630 at 1323.073 kb on - strand, within JDDGAC_07630 at 1323.073 kb on - strand, within JDDGAC_07630 at 1323.075 kb on - strand, within JDDGAC_07630 at 1323.188 kb on + strand, within JDDGAC_07630 at 1323.243 kb on + strand at 1323.252 kb on - strand at 1323.255 kb on + strand at 1323.255 kb on + strand at 1323.256 kb on - strand at 1323.315 kb on - strand at 1323.329 kb on - strand at 1323.646 kb on - strand, within JDDGAC_07640 at 1323.684 kb on + strand, within JDDGAC_07640 at 1323.994 kb on - strand at 1324.130 kb on - strand, within JDDGAC_07645 at 1324.130 kb on - strand, within JDDGAC_07645 at 1324.198 kb on - strand, within JDDGAC_07645 at 1324.198 kb on - strand, within JDDGAC_07645 at 1324.221 kb on + strand, within JDDGAC_07645 at 1324.280 kb on + strand, within JDDGAC_07645 at 1324.281 kb on - strand, within JDDGAC_07645 at 1324.312 kb on - strand, within JDDGAC_07645 at 1324.348 kb on - strand, within JDDGAC_07645 at 1324.350 kb on + strand, within JDDGAC_07645 at 1324.351 kb on - strand, within JDDGAC_07645 at 1324.382 kb on + strand, within JDDGAC_07645 at 1324.383 kb on - strand, within JDDGAC_07645 at 1324.383 kb on - strand, within JDDGAC_07645 at 1324.394 kb on + strand, within JDDGAC_07645 at 1324.450 kb on + strand, within JDDGAC_07645 at 1324.451 kb on - strand, within JDDGAC_07645 at 1324.655 kb on - strand at 1324.660 kb on - strand at 1324.759 kb on - strand at 1324.811 kb on - strand at 1324.813 kb on - strand at 1324.820 kb on - strand at 1324.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,322,676 + -0.8 1,322,676 + -2.5 1,322,746 + +0.7 1,322,746 + -0.8 1,322,769 + JDDGAC_07625 0.32 +0.2 1,322,770 - JDDGAC_07625 0.33 -1.6 1,323,016 - JDDGAC_07630 0.45 +3.0 1,323,016 - JDDGAC_07630 0.45 -0.4 1,323,025 - JDDGAC_07630 0.47 +0.1 1,323,073 - JDDGAC_07630 0.58 -0.4 1,323,073 - JDDGAC_07630 0.58 -0.5 1,323,075 - JDDGAC_07630 0.58 +1.4 1,323,188 + JDDGAC_07630 0.85 +1.0 1,323,243 + +1.0 1,323,252 - -0.4 1,323,255 + -0.5 1,323,255 + +0.2 1,323,256 - +1.4 1,323,315 - -1.6 1,323,329 - -0.5 1,323,646 - JDDGAC_07640 0.14 -1.3 1,323,684 + JDDGAC_07640 0.24 -1.2 1,323,994 - +0.1 1,324,130 - JDDGAC_07645 0.13 +0.3 1,324,130 - JDDGAC_07645 0.13 -2.0 1,324,198 - JDDGAC_07645 0.26 -0.1 1,324,198 - JDDGAC_07645 0.26 -0.4 1,324,221 + JDDGAC_07645 0.31 +0.6 1,324,280 + JDDGAC_07645 0.42 +0.5 1,324,281 - JDDGAC_07645 0.42 -1.1 1,324,312 - JDDGAC_07645 0.48 -2.4 1,324,348 - JDDGAC_07645 0.55 -0.3 1,324,350 + JDDGAC_07645 0.56 -1.2 1,324,351 - JDDGAC_07645 0.56 -1.2 1,324,382 + JDDGAC_07645 0.62 +0.8 1,324,383 - JDDGAC_07645 0.62 +0.7 1,324,383 - JDDGAC_07645 0.62 -1.4 1,324,394 + JDDGAC_07645 0.65 -0.8 1,324,450 + JDDGAC_07645 0.75 -0.2 1,324,451 - JDDGAC_07645 0.76 +0.4 1,324,655 - +0.3 1,324,660 - -0.7 1,324,759 - -0.0 1,324,811 - +0.5 1,324,813 - +0.4 1,324,820 - -0.7 1,324,969 - +0.0
Or see this region's nucleotide sequence