Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gp18 and JDDGAC_06820 overlap by 1 nucleotides JDDGAC_06820 and JDDGAC_06825 overlap by 8 nucleotides JDDGAC_06825 and JDDGAC_06830 are separated by 47 nucleotides JDDGAC_06830 and JDDGAC_06835 are separated by 23 nucleotides JDDGAC_06835 and JDDGAC_06840 are separated by 14 nucleotides
JDDGAC_06815: gp18 - phage minor tail protein L, at 1,188,515 to 1,189,213
gp18
JDDGAC_06820: JDDGAC_06820 - phage tail protein, at 1,189,213 to 1,189,554
_06820
JDDGAC_06825: JDDGAC_06825 - phage tail tape measure protein, at 1,189,547 to 1,192,789
_06825
JDDGAC_06830: JDDGAC_06830 - Phage tail protein, at 1,192,837 to 1,193,118
_06830
JDDGAC_06835: JDDGAC_06835 - phage tail protein, at 1,193,142 to 1,193,516
_06835
JDDGAC_06840: JDDGAC_06840 - phage tail protein, at 1,193,531 to 1,194,247
_06840
Position (kb) 1189
1190
1191
1192
1193 Strain fitness (log2 ratio) -1
0
1 at 1188.695 kb on - strand, within gp18 at 1188.695 kb on - strand, within gp18 at 1188.695 kb on - strand, within gp18 at 1190.948 kb on + strand, within JDDGAC_06825 at 1190.948 kb on + strand, within JDDGAC_06825 at 1193.619 kb on + strand, within JDDGAC_06840 at 1193.619 kb on + strand, within JDDGAC_06840 at 1193.713 kb on + strand, within JDDGAC_06840 at 1193.714 kb on - strand, within JDDGAC_06840
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 1,188,695 - gp18 JDDGAC_06815 0.26 +0.5 1,188,695 - gp18 JDDGAC_06815 0.26 +0.6 1,188,695 - gp18 JDDGAC_06815 0.26 -0.2 1,190,948 + JDDGAC_06825 0.43 -0.4 1,190,948 + JDDGAC_06825 0.43 -1.0 1,193,619 + JDDGAC_06840 0.12 -1.1 1,193,619 + JDDGAC_06840 0.12 -0.2 1,193,713 + JDDGAC_06840 0.25 -0.7 1,193,714 - JDDGAC_06840 0.26 +0.0
Or see this region's nucleotide sequence