Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_04530 and JDDGAC_04535 are separated by 261 nucleotides JDDGAC_04535 and JDDGAC_04540 are separated by 243 nucleotides JDDGAC_04540 and JDDGAC_04560 are separated by 273 nucleotides JDDGAC_04560 and JDDGAC_04565 overlap by 4 nucleotides
JDDGAC_04530: JDDGAC_04530 - AraC family transcriptional regulator, at 798,636 to 799,223
_04530
JDDGAC_04535: JDDGAC_04535 - TrmB family transcriptional regulator, at 799,485 to 799,682
_04535
JDDGAC_04540: JDDGAC_04540 - ORF6N domain-containing protein, at 799,926 to 800,507
_04540
JDDGAC_04560: JDDGAC_04560 - DUF1133 domain-containing protein, at 800,781 to 801,335
_04560
JDDGAC_04565: JDDGAC_04565 - DUF1364 domain-containing protein, at 801,332 to 801,622
_04565
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1 at 799.956 kb on - strand at 800.019 kb on - strand, within JDDGAC_04540 at 800.019 kb on - strand, within JDDGAC_04540 at 800.019 kb on - strand, within JDDGAC_04540 at 800.019 kb on - strand, within JDDGAC_04540 at 800.019 kb on - strand, within JDDGAC_04540 at 800.448 kb on - strand, within JDDGAC_04540 at 800.507 kb on + strand at 800.577 kb on - strand at 800.663 kb on - strand at 800.663 kb on - strand at 800.722 kb on - strand at 800.758 kb on - strand at 800.841 kb on - strand, within JDDGAC_04560 at 800.862 kb on + strand, within JDDGAC_04560 at 800.862 kb on + strand, within JDDGAC_04560 at 800.959 kb on + strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 800.976 kb on - strand, within JDDGAC_04560 at 801.230 kb on - strand, within JDDGAC_04560 at 801.249 kb on - strand, within JDDGAC_04560 at 801.249 kb on - strand, within JDDGAC_04560 at 801.253 kb on - strand, within JDDGAC_04560 at 801.443 kb on + strand, within JDDGAC_04565 at 801.481 kb on + strand, within JDDGAC_04565
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 799,956 - -0.5 800,019 - JDDGAC_04540 0.16 -1.8 800,019 - JDDGAC_04540 0.16 -2.6 800,019 - JDDGAC_04540 0.16 -1.3 800,019 - JDDGAC_04540 0.16 +0.9 800,019 - JDDGAC_04540 0.16 -1.0 800,448 - JDDGAC_04540 0.90 -0.5 800,507 + -0.5 800,577 - +0.3 800,663 - -2.2 800,663 - +1.2 800,722 - +0.2 800,758 - +0.7 800,841 - JDDGAC_04560 0.11 +0.8 800,862 + JDDGAC_04560 0.15 +0.2 800,862 + JDDGAC_04560 0.15 -1.4 800,959 + JDDGAC_04560 0.32 +1.2 800,976 - JDDGAC_04560 0.35 +0.5 800,976 - JDDGAC_04560 0.35 +1.4 800,976 - JDDGAC_04560 0.35 +0.3 801,230 - JDDGAC_04560 0.81 +0.6 801,249 - JDDGAC_04560 0.84 +1.4 801,249 - JDDGAC_04560 0.84 -2.5 801,253 - JDDGAC_04560 0.85 +1.7 801,443 + JDDGAC_04565 0.38 -1.2 801,481 + JDDGAC_04565 0.51 +0.9
Or see this region's nucleotide sequence