Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03900

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_03890 and JDDGAC_03895 are separated by 122 nucleotidesJDDGAC_03895 and espR1 are separated by 62 nucleotidesespR1 and narU are separated by 305 nucleotides JDDGAC_03890: JDDGAC_03890 - IpaH-like protein, at 673,015 to 673,518 _03890 JDDGAC_03895: JDDGAC_03895 - leucine Rich Repeat family protein, at 673,641 to 674,273 _03895 JDDGAC_03900: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 674,336 to 675,595 espR1 JDDGAC_03905: narU - nitrate/nitrite transporter NarU, at 675,901 to 677,289 narU Position (kb) 674 675 676Strain fitness (log2 ratio) -1 0 1at 674.726 kb on - strand, within espR1at 675.587 kb on + strandat 675.682 kb on + strandat 675.830 kb on + strandat 675.885 kb on - strandat 676.387 kb on - strand, within narUat 676.427 kb on + strand, within narUat 676.428 kb on - strand, within narUat 676.473 kb on - strand, within narUat 676.559 kb on + strand, within narU

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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674,726 - espR1 JDDGAC_03900 0.31 -1.6
675,587 + +0.5
675,682 + +0.8
675,830 + -0.7
675,885 - +0.1
676,387 - narU JDDGAC_03905 0.35 -0.2
676,427 + narU JDDGAC_03905 0.38 -0.5
676,428 - narU JDDGAC_03905 0.38 -0.3
676,473 - narU JDDGAC_03905 0.41 -0.5
676,559 + narU JDDGAC_03905 0.47 +0.5

Or see this region's nucleotide sequence