Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_02400 and JDDGAC_02405 are separated by 34 nucleotides JDDGAC_02405 and dnaQ are separated by 87 nucleotides dnaQ and JDDGAC_02415 are separated by 92 nucleotides JDDGAC_02415 and dicB overlap by 4 nucleotides dicB and JDDGAC_02430 are separated by 400 nucleotides
JDDGAC_02400: JDDGAC_02400 - Integrase, cryptic prophage CP-933P, at 436,203 to 436,358
_02400
JDDGAC_02405: JDDGAC_02405 - DNA-binding protein, at 436,393 to 436,629
_02405
JDDGAC_02410: dnaQ - exonuclease, at 436,717 to 439,188
dnaQ
JDDGAC_02415: JDDGAC_02415 - DUF1482 domain-containing protein, at 439,281 to 439,472
_02415
JDDGAC_02420: dicB - Division inhibition protein DicB, at 439,469 to 439,657
dicB
JDDGAC_02430: JDDGAC_02430 - hypothetical protein, at 440,058 to 440,222
_02430
Position (kb) 436
437
438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 435.919 kb on - strand at 435.988 kb on - strand at 436.398 kb on + strand at 436.398 kb on + strand at 436.512 kb on + strand, within JDDGAC_02405 at 436.633 kb on + strand at 436.634 kb on - strand at 437.206 kb on + strand, within dnaQ at 437.746 kb on + strand, within dnaQ at 438.790 kb on - strand, within dnaQ at 438.954 kb on - strand at 438.954 kb on - strand at 438.954 kb on - strand at 438.954 kb on - strand at 439.527 kb on - strand, within dicB at 440.141 kb on + strand, within JDDGAC_02430
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 435,919 - -0.4 435,988 - -3.3 436,398 + -1.9 436,398 + -0.8 436,512 + JDDGAC_02405 0.50 +0.8 436,633 + -2.7 436,634 - +0.6 437,206 + dnaQ JDDGAC_02410 0.20 +0.0 437,746 + dnaQ JDDGAC_02410 0.42 +0.2 438,790 - dnaQ JDDGAC_02410 0.84 -2.8 438,954 - +0.7 438,954 - -0.6 438,954 - +0.2 438,954 - +1.0 439,527 - dicB JDDGAC_02420 0.31 +0.8 440,141 + JDDGAC_02430 0.50 -1.7
Or see this region's nucleotide sequence