Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfE and JDDGAC_02370 are separated by 198 nucleotides JDDGAC_02370 and ynfC are separated by 71 nucleotides ynfC and speG are separated by 2 nucleotides speG and ynfB are separated by 34 nucleotides
JDDGAC_02365: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 430,256 to 432,682
ynfE
JDDGAC_02370: JDDGAC_02370 - DUF1161 domain-containing protein, at 432,881 to 433,186
_02370
JDDGAC_02375: ynfC - YnfC family lipoprotein, at 433,258 to 434,004
ynfC
JDDGAC_02380: speG - spermidine N1-acetyltransferase, at 434,007 to 434,567
speG
JDDGAC_02385: ynfB - DUF1283 domain-containing protein, at 434,602 to 434,943
ynfB
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.293 kb on - strand, within ynfE at 432.342 kb on + strand, within ynfE at 432.367 kb on + strand, within ynfE at 432.480 kb on - strand at 432.480 kb on - strand at 432.813 kb on + strand at 432.824 kb on + strand at 432.879 kb on + strand at 432.880 kb on - strand at 432.880 kb on - strand at 433.032 kb on - strand, within JDDGAC_02370 at 433.036 kb on + strand, within JDDGAC_02370 at 433.037 kb on - strand, within JDDGAC_02370 at 433.037 kb on - strand, within JDDGAC_02370 at 433.037 kb on - strand, within JDDGAC_02370 at 433.308 kb on - strand at 433.319 kb on + strand at 433.579 kb on + strand, within ynfC at 433.619 kb on + strand, within ynfC at 434.003 kb on - strand at 434.078 kb on + strand, within speG at 434.207 kb on - strand, within speG at 434.301 kb on - strand, within speG at 434.336 kb on + strand, within speG at 434.420 kb on + strand, within speG at 434.421 kb on - strand, within speG at 434.509 kb on - strand, within speG at 434.513 kb on - strand at 434.579 kb on - strand at 434.957 kb on + strand at 434.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 432,293 - ynfE JDDGAC_02365 0.84 +0.8 432,342 + ynfE JDDGAC_02365 0.86 -0.1 432,367 + ynfE JDDGAC_02365 0.87 -1.2 432,480 - +0.3 432,480 - +1.9 432,813 + +0.0 432,824 + +0.5 432,879 + +0.7 432,880 - -0.0 432,880 - +0.9 433,032 - JDDGAC_02370 0.49 -0.4 433,036 + JDDGAC_02370 0.51 +1.3 433,037 - JDDGAC_02370 0.51 -0.3 433,037 - JDDGAC_02370 0.51 -2.3 433,037 - JDDGAC_02370 0.51 -1.7 433,308 - -1.7 433,319 + +0.6 433,579 + ynfC JDDGAC_02375 0.43 -1.3 433,619 + ynfC JDDGAC_02375 0.48 -1.7 434,003 - -0.6 434,078 + speG JDDGAC_02380 0.13 -1.3 434,207 - speG JDDGAC_02380 0.36 +1.8 434,301 - speG JDDGAC_02380 0.52 -1.4 434,336 + speG JDDGAC_02380 0.59 -0.7 434,420 + speG JDDGAC_02380 0.74 +0.3 434,421 - speG JDDGAC_02380 0.74 +0.0 434,509 - speG JDDGAC_02380 0.89 +2.5 434,513 - +1.4 434,579 - +0.5 434,957 + -1.5 434,979 + +0.2
Or see this region's nucleotide sequence