Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02135

Experiment: WM_Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxD and rsxC are separated by 0 nucleotidesrsxC and rsxB overlap by 8 nucleotidesrsxB and rsxA overlap by 1 nucleotides JDDGAC_02130: rsxD - electron transport complex subunit RsxD, at 380,626 to 381,684 rsxD JDDGAC_02135: rsxC - electron transport complex subunit RsxC, at 381,685 to 384,003 rsxC JDDGAC_02140: rsxB - electron transport complex subunit RsxB, at 383,996 to 384,574 rsxB JDDGAC_02145: rsxA - electron transport complex subunit RsxA, at 384,574 to 385,155 rsxA Position (kb) 381 382 383 384 385Strain fitness (log2 ratio) -2 -1 0 1 2 3at 380.756 kb on - strand, within rsxDat 380.756 kb on - strand, within rsxDat 380.803 kb on - strand, within rsxDat 380.939 kb on - strand, within rsxDat 380.939 kb on - strand, within rsxDat 380.989 kb on + strand, within rsxDat 381.017 kb on - strand, within rsxDat 381.070 kb on - strand, within rsxDat 381.109 kb on - strand, within rsxDat 381.158 kb on - strand, within rsxDat 381.436 kb on + strand, within rsxDat 381.503 kb on - strand, within rsxDat 381.625 kb on - strandat 381.655 kb on - strandat 381.656 kb on + strandat 381.657 kb on - strandat 381.796 kb on - strandat 381.931 kb on - strand, within rsxCat 382.474 kb on - strand, within rsxCat 382.483 kb on - strand, within rsxCat 382.483 kb on - strand, within rsxCat 382.570 kb on - strand, within rsxCat 382.771 kb on - strand, within rsxCat 382.815 kb on - strand, within rsxCat 382.864 kb on - strand, within rsxCat 382.936 kb on - strand, within rsxCat 383.042 kb on - strand, within rsxCat 383.166 kb on - strand, within rsxCat 383.299 kb on - strand, within rsxCat 383.423 kb on - strand, within rsxCat 383.423 kb on - strand, within rsxCat 383.472 kb on - strand, within rsxCat 383.599 kb on + strand, within rsxCat 383.676 kb on + strand, within rsxCat 383.810 kb on - strandat 383.810 kb on - strandat 383.998 kb on - strandat 384.119 kb on + strand, within rsxBat 384.120 kb on - strand, within rsxBat 384.212 kb on - strand, within rsxBat 384.576 kb on - strandat 384.619 kb on - strandat 384.858 kb on - strand, within rsxAat 384.955 kb on - strand, within rsxA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas41
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380,756 - rsxD JDDGAC_02130 0.12 -0.7
380,756 - rsxD JDDGAC_02130 0.12 +1.5
380,803 - rsxD JDDGAC_02130 0.17 +0.6
380,939 - rsxD JDDGAC_02130 0.30 -0.5
380,939 - rsxD JDDGAC_02130 0.30 +2.8
380,989 + rsxD JDDGAC_02130 0.34 -1.4
381,017 - rsxD JDDGAC_02130 0.37 -0.7
381,070 - rsxD JDDGAC_02130 0.42 -0.7
381,109 - rsxD JDDGAC_02130 0.46 -1.4
381,158 - rsxD JDDGAC_02130 0.50 -1.6
381,436 + rsxD JDDGAC_02130 0.76 -1.6
381,503 - rsxD JDDGAC_02130 0.83 -0.9
381,625 - -1.7
381,655 - -1.5
381,656 + -0.6
381,657 - -2.4
381,796 - -0.4
381,931 - rsxC JDDGAC_02135 0.11 -0.6
382,474 - rsxC JDDGAC_02135 0.34 +1.1
382,483 - rsxC JDDGAC_02135 0.34 -0.1
382,483 - rsxC JDDGAC_02135 0.34 -0.6
382,570 - rsxC JDDGAC_02135 0.38 +1.0
382,771 - rsxC JDDGAC_02135 0.47 +1.0
382,815 - rsxC JDDGAC_02135 0.49 -0.5
382,864 - rsxC JDDGAC_02135 0.51 -1.6
382,936 - rsxC JDDGAC_02135 0.54 -0.3
383,042 - rsxC JDDGAC_02135 0.59 +1.0
383,166 - rsxC JDDGAC_02135 0.64 -0.9
383,299 - rsxC JDDGAC_02135 0.70 -0.8
383,423 - rsxC JDDGAC_02135 0.75 -1.5
383,423 - rsxC JDDGAC_02135 0.75 -0.9
383,472 - rsxC JDDGAC_02135 0.77 -1.2
383,599 + rsxC JDDGAC_02135 0.83 -0.5
383,676 + rsxC JDDGAC_02135 0.86 -1.3
383,810 - -2.2
383,810 - +0.4
383,998 - +1.2
384,119 + rsxB JDDGAC_02140 0.21 -0.1
384,120 - rsxB JDDGAC_02140 0.21 -1.3
384,212 - rsxB JDDGAC_02140 0.37 -0.8
384,576 - +0.5
384,619 - -0.9
384,858 - rsxA JDDGAC_02145 0.49 -2.1
384,955 - rsxA JDDGAC_02145 0.65 -2.3

Or see this region's nucleotide sequence