Experiment: WM_Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhV and ydhW are separated by 12 nucleotides ydhW and JDDGAC_01890 are separated by 63 nucleotides JDDGAC_01890 and ydhU overlap by 4 nucleotides ydhU and ydhT are separated by 51 nucleotides
JDDGAC_01880: ydhV - aldehyde ferredoxin oxidoreductase, at 335,699 to 337,801
ydhV
JDDGAC_01885: ydhW - YdhW family putative oxidoreductase system protein, at 337,814 to 338,452
ydhW
JDDGAC_01890: JDDGAC_01890 - Uncharacterized ferredoxin-like protein YdhX, at 338,516 to 339,184
_01890
JDDGAC_01895: ydhU - Putative cytochrome YdhU, at 339,181 to 339,966
ydhU
JDDGAC_01900: ydhT - protein YdhT, at 340,018 to 340,782
ydhT
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 337.561 kb on + strand, within ydhV at 337.567 kb on + strand, within ydhV at 337.582 kb on + strand, within ydhV at 337.582 kb on + strand, within ydhV at 337.582 kb on + strand, within ydhV at 337.583 kb on - strand, within ydhV at 337.685 kb on + strand at 337.788 kb on + strand at 337.788 kb on + strand at 337.789 kb on - strand at 338.009 kb on + strand, within ydhW at 338.086 kb on + strand, within ydhW at 338.108 kb on + strand, within ydhW at 338.108 kb on + strand, within ydhW at 338.222 kb on + strand, within ydhW at 338.235 kb on - strand, within ydhW at 338.264 kb on + strand, within ydhW at 338.264 kb on + strand, within ydhW at 338.386 kb on + strand, within ydhW at 338.393 kb on + strand at 338.394 kb on - strand at 338.666 kb on - strand, within JDDGAC_01890 at 338.692 kb on + strand, within JDDGAC_01890 at 338.823 kb on + strand, within JDDGAC_01890 at 338.901 kb on - strand, within JDDGAC_01890 at 338.962 kb on + strand, within JDDGAC_01890 at 339.094 kb on + strand, within JDDGAC_01890 at 339.115 kb on - strand, within JDDGAC_01890 at 339.180 kb on + strand at 339.180 kb on + strand at 339.229 kb on + strand at 339.229 kb on + strand at 339.229 kb on + strand at 339.230 kb on - strand at 339.230 kb on - strand at 339.458 kb on + strand, within ydhU at 339.730 kb on + strand, within ydhU at 339.730 kb on + strand, within ydhU at 339.730 kb on + strand, within ydhU at 339.731 kb on - strand, within ydhU at 339.768 kb on - strand, within ydhU at 339.830 kb on - strand, within ydhU at 339.864 kb on + strand, within ydhU at 340.060 kb on + strand at 340.183 kb on - strand, within ydhT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas41 remove 337,561 + ydhV JDDGAC_01880 0.89 -1.9 337,567 + ydhV JDDGAC_01880 0.89 -2.0 337,582 + ydhV JDDGAC_01880 0.90 -0.8 337,582 + ydhV JDDGAC_01880 0.90 +0.2 337,582 + ydhV JDDGAC_01880 0.90 -0.7 337,583 - ydhV JDDGAC_01880 0.90 -0.4 337,685 + -0.2 337,788 + -0.0 337,788 + -0.1 337,789 - -2.0 338,009 + ydhW JDDGAC_01885 0.31 +0.2 338,086 + ydhW JDDGAC_01885 0.43 +2.5 338,108 + ydhW JDDGAC_01885 0.46 -0.5 338,108 + ydhW JDDGAC_01885 0.46 +0.4 338,222 + ydhW JDDGAC_01885 0.64 -0.4 338,235 - ydhW JDDGAC_01885 0.66 +0.8 338,264 + ydhW JDDGAC_01885 0.70 +0.2 338,264 + ydhW JDDGAC_01885 0.70 -0.2 338,386 + ydhW JDDGAC_01885 0.90 -0.0 338,393 + +0.8 338,394 - +1.0 338,666 - JDDGAC_01890 0.22 -0.4 338,692 + JDDGAC_01890 0.26 -0.4 338,823 + JDDGAC_01890 0.46 -1.9 338,901 - JDDGAC_01890 0.58 -0.1 338,962 + JDDGAC_01890 0.67 -2.7 339,094 + JDDGAC_01890 0.86 -1.3 339,115 - JDDGAC_01890 0.90 -0.2 339,180 + -1.9 339,180 + +0.4 339,229 + +0.6 339,229 + -0.1 339,229 + +0.0 339,230 - -2.4 339,230 - +2.9 339,458 + ydhU JDDGAC_01895 0.35 +0.3 339,730 + ydhU JDDGAC_01895 0.70 -0.4 339,730 + ydhU JDDGAC_01895 0.70 -0.0 339,730 + ydhU JDDGAC_01895 0.70 -2.0 339,731 - ydhU JDDGAC_01895 0.70 +1.4 339,768 - ydhU JDDGAC_01895 0.75 +3.7 339,830 - ydhU JDDGAC_01895 0.83 +1.8 339,864 + ydhU JDDGAC_01895 0.87 +0.5 340,060 + -0.8 340,183 - ydhT JDDGAC_01900 0.22 +0.7
Or see this region's nucleotide sequence