Experiment: L-Valine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00511 and PFR28_00512 are separated by 153 nucleotides PFR28_00512 and PFR28_00513 are separated by 4 nucleotides PFR28_00513 and PFR28_00514 are separated by 135 nucleotides PFR28_00514 and PFR28_00515 overlap by 7 nucleotides
PFR28_00511: PFR28_00511 - Isochorismatase family protein YecD, at 548,367 to 548,969
_00511
PFR28_00512: PFR28_00512 - hypothetical protein, at 549,123 to 549,326
_00512
PFR28_00513: PFR28_00513 - hypothetical protein, at 549,331 to 549,816
_00513
PFR28_00514: PFR28_00514 - hypothetical protein, at 549,952 to 550,452
_00514
PFR28_00515: PFR28_00515 - hypothetical protein, at 550,446 to 550,943
_00515
Position (kb) 549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.356 kb on - strand at 548.356 kb on - strand at 548.419 kb on + strand at 548.419 kb on + strand at 548.419 kb on + strand at 548.420 kb on - strand at 548.420 kb on - strand at 548.840 kb on + strand, within PFR28_00511 at 548.840 kb on + strand, within PFR28_00511 at 548.840 kb on + strand, within PFR28_00511 at 548.840 kb on + strand, within PFR28_00511 at 548.840 kb on + strand, within PFR28_00511 at 548.841 kb on - strand, within PFR28_00511 at 548.841 kb on - strand, within PFR28_00511 at 548.859 kb on + strand, within PFR28_00511 at 548.860 kb on - strand, within PFR28_00511 at 548.860 kb on - strand, within PFR28_00511 at 548.860 kb on - strand, within PFR28_00511 at 548.860 kb on - strand, within PFR28_00511 at 548.925 kb on + strand at 548.926 kb on - strand at 549.031 kb on - strand at 549.040 kb on + strand at 549.040 kb on + strand at 549.040 kb on + strand at 549.041 kb on - strand at 549.041 kb on - strand at 549.041 kb on - strand at 549.041 kb on - strand at 549.041 kb on - strand at 549.047 kb on + strand at 549.047 kb on + strand at 549.048 kb on - strand at 549.344 kb on - strand at 549.358 kb on + strand at 549.359 kb on - strand at 549.386 kb on + strand, within PFR28_00513 at 549.386 kb on + strand, within PFR28_00513 at 549.387 kb on - strand, within PFR28_00513 at 549.387 kb on - strand, within PFR28_00513 at 549.400 kb on + strand, within PFR28_00513 at 549.400 kb on + strand, within PFR28_00513 at 549.400 kb on + strand, within PFR28_00513 at 549.400 kb on + strand, within PFR28_00513 at 549.401 kb on - strand, within PFR28_00513 at 549.499 kb on - strand, within PFR28_00513 at 549.518 kb on + strand, within PFR28_00513 at 549.518 kb on + strand, within PFR28_00513 at 549.518 kb on + strand, within PFR28_00513 at 549.519 kb on - strand, within PFR28_00513 at 549.519 kb on - strand, within PFR28_00513 at 549.519 kb on - strand, within PFR28_00513 at 549.688 kb on + strand, within PFR28_00513 at 549.901 kb on + strand at 549.990 kb on + strand at 549.990 kb on + strand at 549.990 kb on + strand at 549.991 kb on - strand at 549.991 kb on - strand at 550.058 kb on + strand, within PFR28_00514 at 550.286 kb on + strand, within PFR28_00514 at 550.287 kb on - strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.307 kb on + strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.308 kb on - strand, within PFR28_00514 at 550.447 kb on + strand at 550.447 kb on + strand at 550.447 kb on + strand at 550.447 kb on + strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.448 kb on - strand at 550.457 kb on - strand at 550.457 kb on - strand at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.519 kb on + strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.520 kb on - strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.534 kb on + strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.535 kb on - strand, within PFR28_00515 at 550.653 kb on - strand, within PFR28_00515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM remove 548,356 - +1.5 548,356 - +1.1 548,419 + +0.2 548,419 + -0.7 548,419 + +0.6 548,420 - +0.8 548,420 - -1.1 548,840 + PFR28_00511 0.78 +0.8 548,840 + PFR28_00511 0.78 +0.7 548,840 + PFR28_00511 0.78 +0.4 548,840 + PFR28_00511 0.78 -1.5 548,840 + PFR28_00511 0.78 +1.0 548,841 - PFR28_00511 0.79 -0.2 548,841 - PFR28_00511 0.79 -1.8 548,859 + PFR28_00511 0.82 +0.8 548,860 - PFR28_00511 0.82 -1.3 548,860 - PFR28_00511 0.82 -1.0 548,860 - PFR28_00511 0.82 -0.3 548,860 - PFR28_00511 0.82 -0.2 548,925 + +0.9 548,926 - +0.3 549,031 - -2.2 549,040 + -1.5 549,040 + -0.1 549,040 + +1.4 549,041 - -0.1 549,041 - +0.1 549,041 - +0.2 549,041 - -0.1 549,041 - +0.6 549,047 + -1.1 549,047 + -1.2 549,048 - -0.8 549,344 - +0.5 549,358 + +1.2 549,359 - +0.8 549,386 + PFR28_00513 0.11 -0.6 549,386 + PFR28_00513 0.11 -1.9 549,387 - PFR28_00513 0.12 -0.5 549,387 - PFR28_00513 0.12 -0.2 549,400 + PFR28_00513 0.14 +0.4 549,400 + PFR28_00513 0.14 +0.8 549,400 + PFR28_00513 0.14 +0.8 549,400 + PFR28_00513 0.14 +0.3 549,401 - PFR28_00513 0.14 +1.0 549,499 - PFR28_00513 0.35 +0.3 549,518 + PFR28_00513 0.38 +0.5 549,518 + PFR28_00513 0.38 +0.3 549,518 + PFR28_00513 0.38 +0.9 549,519 - PFR28_00513 0.39 +0.4 549,519 - PFR28_00513 0.39 +0.1 549,519 - PFR28_00513 0.39 -0.5 549,688 + PFR28_00513 0.73 -0.9 549,901 + -0.9 549,990 + +0.2 549,990 + -1.0 549,990 + +0.5 549,991 - +0.1 549,991 - -1.1 550,058 + PFR28_00514 0.21 +0.8 550,286 + PFR28_00514 0.67 -1.4 550,287 - PFR28_00514 0.67 -0.4 550,307 + PFR28_00514 0.71 +1.2 550,307 + PFR28_00514 0.71 +0.7 550,307 + PFR28_00514 0.71 +0.4 550,307 + PFR28_00514 0.71 -0.5 550,307 + PFR28_00514 0.71 -1.1 550,308 - PFR28_00514 0.71 -0.8 550,308 - PFR28_00514 0.71 -0.1 550,308 - PFR28_00514 0.71 -0.4 550,308 - PFR28_00514 0.71 +0.5 550,308 - PFR28_00514 0.71 -1.9 550,308 - PFR28_00514 0.71 -0.2 550,308 - PFR28_00514 0.71 +0.5 550,308 - PFR28_00514 0.71 +0.7 550,308 - PFR28_00514 0.71 -0.9 550,308 - PFR28_00514 0.71 +0.4 550,308 - PFR28_00514 0.71 +1.8 550,308 - PFR28_00514 0.71 +0.1 550,447 + +0.2 550,447 + -2.2 550,447 + +0.0 550,447 + -0.8 550,448 - +0.3 550,448 - -0.7 550,448 - -0.2 550,448 - +1.1 550,448 - -0.4 550,448 - +0.6 550,448 - -0.5 550,448 - +1.1 550,448 - -0.5 550,448 - -0.7 550,448 - -0.5 550,448 - +0.7 550,448 - +1.0 550,457 - -0.3 550,457 - -0.5 550,519 + PFR28_00515 0.15 +0.1 550,519 + PFR28_00515 0.15 -0.2 550,519 + PFR28_00515 0.15 -0.2 550,519 + PFR28_00515 0.15 -1.1 550,519 + PFR28_00515 0.15 +0.7 550,519 + PFR28_00515 0.15 +0.2 550,519 + PFR28_00515 0.15 -0.1 550,519 + PFR28_00515 0.15 +0.5 550,519 + PFR28_00515 0.15 -2.1 550,519 + PFR28_00515 0.15 -0.2 550,519 + PFR28_00515 0.15 -0.3 550,520 - PFR28_00515 0.15 -0.5 550,520 - PFR28_00515 0.15 -0.5 550,520 - PFR28_00515 0.15 -1.7 550,534 + PFR28_00515 0.18 -1.3 550,534 + PFR28_00515 0.18 +0.3 550,534 + PFR28_00515 0.18 -0.6 550,534 + PFR28_00515 0.18 +0.2 550,534 + PFR28_00515 0.18 -0.6 550,534 + PFR28_00515 0.18 -1.2 550,534 + PFR28_00515 0.18 +0.7 550,534 + PFR28_00515 0.18 +0.4 550,534 + PFR28_00515 0.18 -1.2 550,534 + PFR28_00515 0.18 -1.2 550,534 + PFR28_00515 0.18 +0.6 550,534 + PFR28_00515 0.18 +1.2 550,534 + PFR28_00515 0.18 -0.3 550,534 + PFR28_00515 0.18 -1.6 550,535 - PFR28_00515 0.18 +1.5 550,535 - PFR28_00515 0.18 +1.3 550,535 - PFR28_00515 0.18 -1.2 550,535 - PFR28_00515 0.18 +0.8 550,535 - PFR28_00515 0.18 +2.2 550,535 - PFR28_00515 0.18 +0.5 550,535 - PFR28_00515 0.18 +1.2 550,535 - PFR28_00515 0.18 -0.1 550,653 - PFR28_00515 0.42 -0.1
Or see this region's nucleotide sequence