Experiment: WM_EV219
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bet and gam are separated by 5 nucleotides gam and kil are separated by 74 nucleotides kil and cIII overlap by 32 nucleotides cIII and ea10 are separated by 72 nucleotides ea10 and JDDGAC_28775 are separated by 182 nucleotides JDDGAC_28775 and JDDGAC_28780 are separated by 58 nucleotides JDDGAC_28780 and JDDGAC_28785 overlap by 23 nucleotides
JDDGAC_28750: bet - phage recombination protein Bet, at 5,509,905 to 5,510,690
bet
JDDGAC_28755: gam - Host-nuclease inhibitor protein gam, at 5,510,696 to 5,510,992
gam
JDDGAC_28760: kil - Protein kil, at 5,511,067 to 5,511,210
kil
JDDGAC_28765: cIII - Protease inhibitor III, at 5,511,179 to 5,511,343
cIII
JDDGAC_28770: ea10 - Protein ea10, at 5,511,416 to 5,511,784
ea10
JDDGAC_28775: JDDGAC_28775 - hypothetical protein, at 5,511,967 to 5,512,218
_28775
JDDGAC_28780: JDDGAC_28780 - antitermination protein N, at 5,512,277 to 5,512,549
_28780
JDDGAC_28785: JDDGAC_28785 - hypothetical protein, at 5,512,527 to 5,512,709
_28785
Position (kb) 5511
5512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5510.684 kb on + strand at 5510.698 kb on - strand at 5510.980 kb on - strand at 5510.980 kb on - strand at 5511.106 kb on + strand, within kil at 5511.118 kb on - strand, within kil at 5511.430 kb on + strand at 5511.464 kb on - strand, within ea10 at 5511.562 kb on - strand, within ea10 at 5511.562 kb on - strand, within ea10 at 5511.710 kb on + strand, within ea10 at 5511.711 kb on - strand, within ea10 at 5511.872 kb on - strand at 5512.008 kb on - strand, within JDDGAC_28775 at 5512.008 kb on - strand, within JDDGAC_28775 at 5512.011 kb on + strand, within JDDGAC_28775 at 5512.012 kb on - strand, within JDDGAC_28775 at 5512.012 kb on - strand, within JDDGAC_28775 at 5512.220 kb on + strand at 5512.221 kb on - strand at 5512.232 kb on + strand at 5512.233 kb on - strand at 5512.386 kb on - strand, within JDDGAC_28780 at 5512.421 kb on + strand, within JDDGAC_28780 at 5512.421 kb on + strand, within JDDGAC_28780 at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.549 kb on + strand at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.631 kb on + strand, within JDDGAC_28785 at 5512.632 kb on - strand, within JDDGAC_28785 at 5512.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_EV219 remove 5,510,684 + +0.4 5,510,698 - -2.4 5,510,980 - -1.3 5,510,980 - -0.2 5,511,106 + kil JDDGAC_28760 0.27 -0.7 5,511,118 - kil JDDGAC_28760 0.35 -1.0 5,511,430 + -0.3 5,511,464 - ea10 JDDGAC_28770 0.13 +0.3 5,511,562 - ea10 JDDGAC_28770 0.40 -1.3 5,511,562 - ea10 JDDGAC_28770 0.40 +0.0 5,511,710 + ea10 JDDGAC_28770 0.80 -0.5 5,511,711 - ea10 JDDGAC_28770 0.80 -2.3 5,511,872 - -0.8 5,512,008 - JDDGAC_28775 0.16 -0.5 5,512,008 - JDDGAC_28775 0.16 +0.5 5,512,011 + JDDGAC_28775 0.17 +0.3 5,512,012 - JDDGAC_28775 0.18 -2.6 5,512,012 - JDDGAC_28775 0.18 -0.2 5,512,220 + +2.4 5,512,221 - +0.5 5,512,232 + -1.5 5,512,233 - -0.2 5,512,386 - JDDGAC_28780 0.40 -0.3 5,512,421 + JDDGAC_28780 0.53 +0.9 5,512,421 + JDDGAC_28780 0.53 -0.8 5,512,549 + +0.1 5,512,549 + -3.1 5,512,549 + +2.6 5,512,549 + +0.8 5,512,549 + -0.9 5,512,549 + -1.1 5,512,549 + +0.4 5,512,549 + -0.8 5,512,631 + JDDGAC_28785 0.57 +1.6 5,512,631 + JDDGAC_28785 0.57 -0.5 5,512,631 + JDDGAC_28785 0.57 -1.1 5,512,632 - JDDGAC_28785 0.57 +1.1 5,512,743 + +0.5
Or see this region's nucleotide sequence