Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06750

Experiment: Lambda

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpotB and espK are separated by 363 nucleotidesespK and JDDGAC_06755 are separated by 188 nucleotidesJDDGAC_06755 and JDDGAC_06760 are separated by 141 nucleotidesJDDGAC_06760 and tnp-IS3 are separated by 10 nucleotides JDDGAC_06745: potB - spermidine/putrescine ABC transporter permease PotB, at 1,174,175 to 1,175,038 potB JDDGAC_06750: espK - type III secretion system effector EspK, at 1,175,402 to 1,176,763 espK JDDGAC_06755: JDDGAC_06755 - hypothetical protein, at 1,176,952 to 1,177,185 _06755 JDDGAC_06760: JDDGAC_06760 - Mutator family transposase, at 1,177,327 to 1,177,626 _06760 JDDGAC_06765: tnp-IS3 - IS3 family transposase, at 1,177,637 to 1,177,798 tnp-IS3 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1174.527 kb on - strand, within potBat 1174.559 kb on + strand, within potBat 1174.683 kb on - strand, within potBat 1174.771 kb on + strand, within potBat 1174.841 kb on + strand, within potBat 1174.841 kb on + strand, within potBat 1174.899 kb on + strand, within potBat 1174.962 kb on + strandat 1175.286 kb on + strandat 1175.350 kb on + strandat 1175.359 kb on + strandat 1175.367 kb on - strandat 1175.529 kb on - strandat 1175.621 kb on - strand, within espKat 1175.635 kb on + strand, within espKat 1175.786 kb on + strand, within espKat 1175.786 kb on + strand, within espKat 1175.790 kb on + strand, within espKat 1175.895 kb on - strand, within espKat 1175.975 kb on - strand, within espKat 1175.977 kb on + strand, within espKat 1175.977 kb on + strand, within espKat 1175.978 kb on - strand, within espKat 1176.118 kb on - strand, within espKat 1176.194 kb on + strand, within espKat 1176.562 kb on + strand, within espKat 1176.562 kb on + strand, within espKat 1176.921 kb on + strandat 1176.926 kb on - strandat 1176.946 kb on - strandat 1176.949 kb on + strandat 1176.953 kb on + strandat 1177.056 kb on + strand, within JDDGAC_06755at 1177.081 kb on - strand, within JDDGAC_06755at 1177.215 kb on - strandat 1177.261 kb on + strandat 1177.538 kb on + strand, within JDDGAC_06760at 1177.589 kb on + strand, within JDDGAC_06760at 1177.603 kb on - strandat 1177.603 kb on - strandat 1177.605 kb on + strandat 1177.615 kb on + strandat 1177.620 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lambda
remove
1,174,527 - potB JDDGAC_06745 0.41 -1.2
1,174,559 + potB JDDGAC_06745 0.44 +0.1
1,174,683 - potB JDDGAC_06745 0.59 -1.1
1,174,771 + potB JDDGAC_06745 0.69 -0.5
1,174,841 + potB JDDGAC_06745 0.77 -0.8
1,174,841 + potB JDDGAC_06745 0.77 +1.4
1,174,899 + potB JDDGAC_06745 0.84 +0.9
1,174,962 + -1.4
1,175,286 + -0.9
1,175,350 + -0.4
1,175,359 + +1.7
1,175,367 - -1.8
1,175,529 - +2.0
1,175,621 - espK JDDGAC_06750 0.16 +0.8
1,175,635 + espK JDDGAC_06750 0.17 +1.4
1,175,786 + espK JDDGAC_06750 0.28 +1.0
1,175,786 + espK JDDGAC_06750 0.28 +1.2
1,175,790 + espK JDDGAC_06750 0.28 +0.7
1,175,895 - espK JDDGAC_06750 0.36 +0.6
1,175,975 - espK JDDGAC_06750 0.42 -1.0
1,175,977 + espK JDDGAC_06750 0.42 +0.4
1,175,977 + espK JDDGAC_06750 0.42 +1.2
1,175,978 - espK JDDGAC_06750 0.42 +5.5
1,176,118 - espK JDDGAC_06750 0.53 -0.2
1,176,194 + espK JDDGAC_06750 0.58 -1.0
1,176,562 + espK JDDGAC_06750 0.85 -0.3
1,176,562 + espK JDDGAC_06750 0.85 -0.3
1,176,921 + -0.6
1,176,926 - -1.5
1,176,946 - -0.7
1,176,949 + -0.6
1,176,953 + +0.1
1,177,056 + JDDGAC_06755 0.44 +0.1
1,177,081 - JDDGAC_06755 0.55 -0.4
1,177,215 - +0.7
1,177,261 + +1.8
1,177,538 + JDDGAC_06760 0.70 +1.5
1,177,589 + JDDGAC_06760 0.87 +0.4
1,177,603 - +0.8
1,177,603 - +1.6
1,177,605 + +1.1
1,177,615 + +0.2
1,177,620 + -0.5

Or see this region's nucleotide sequence