Experiment: TP5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and ais are separated by 289 nucleotides ais and nudI are separated by 38 nucleotides nudI and yfaZ are separated by 278 nucleotides
JDDGAC_26960: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 5,164,690 to 5,165,847
arnB
JDDGAC_26965: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 5,166,137 to 5,166,739
ais
JDDGAC_26970: nudI - nucleoside triphosphatase NudI, at 5,166,778 to 5,167,203
nudI
JDDGAC_26975: yfaZ - Outer membrane protein YfaZ, at 5,167,482 to 5,168,024
yfaZ
Position (kb) 5166
5167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5165.184 kb on - strand, within arnB at 5165.221 kb on + strand, within arnB at 5165.221 kb on + strand, within arnB at 5165.345 kb on + strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.421 kb on + strand, within arnB at 5165.422 kb on - strand, within arnB at 5165.636 kb on - strand, within arnB at 5165.644 kb on - strand, within arnB at 5166.121 kb on + strand at 5166.123 kb on + strand at 5166.238 kb on + strand, within ais at 5166.370 kb on + strand, within ais at 5166.371 kb on - strand, within ais at 5166.371 kb on - strand, within ais at 5166.371 kb on - strand, within ais at 5166.458 kb on - strand, within ais at 5166.567 kb on + strand, within ais at 5166.626 kb on + strand, within ais at 5166.627 kb on - strand, within ais at 5166.627 kb on - strand, within ais at 5166.628 kb on + strand, within ais at 5166.640 kb on + strand, within ais at 5166.669 kb on - strand, within ais at 5166.711 kb on - strand at 5166.830 kb on + strand, within nudI at 5166.864 kb on - strand, within nudI at 5166.864 kb on - strand, within nudI at 5166.926 kb on + strand, within nudI at 5166.963 kb on - strand, within nudI at 5166.963 kb on - strand, within nudI at 5166.963 kb on - strand, within nudI at 5166.978 kb on + strand, within nudI at 5167.155 kb on - strand, within nudI at 5167.183 kb on + strand at 5167.188 kb on + strand at 5167.189 kb on - strand at 5167.219 kb on - strand at 5167.219 kb on - strand at 5167.241 kb on + strand at 5167.257 kb on + strand at 5167.273 kb on + strand at 5167.292 kb on - strand at 5167.302 kb on - strand at 5167.304 kb on + strand at 5167.305 kb on - strand at 5167.429 kb on + strand at 5167.458 kb on + strand at 5167.735 kb on - strand, within yfaZ at 5167.735 kb on - strand, within yfaZ
Per-strain Table
Position Strand Gene LocusTag Fraction TP5 remove 5,165,184 - arnB JDDGAC_26960 0.43 +0.5 5,165,221 + arnB JDDGAC_26960 0.46 -0.2 5,165,221 + arnB JDDGAC_26960 0.46 -0.4 5,165,345 + arnB JDDGAC_26960 0.57 +0.2 5,165,346 - arnB JDDGAC_26960 0.57 -0.3 5,165,346 - arnB JDDGAC_26960 0.57 -2.8 5,165,346 - arnB JDDGAC_26960 0.57 -1.3 5,165,349 + arnB JDDGAC_26960 0.57 -2.5 5,165,349 + arnB JDDGAC_26960 0.57 +0.4 5,165,349 + arnB JDDGAC_26960 0.57 -0.2 5,165,349 + arnB JDDGAC_26960 0.57 -1.2 5,165,350 - arnB JDDGAC_26960 0.57 +0.3 5,165,350 - arnB JDDGAC_26960 0.57 +0.7 5,165,350 - arnB JDDGAC_26960 0.57 -0.2 5,165,350 - arnB JDDGAC_26960 0.57 +0.5 5,165,421 + arnB JDDGAC_26960 0.63 -0.2 5,165,422 - arnB JDDGAC_26960 0.63 -0.6 5,165,636 - arnB JDDGAC_26960 0.82 +0.2 5,165,644 - arnB JDDGAC_26960 0.82 +0.2 5,166,121 + +0.3 5,166,123 + +0.6 5,166,238 + ais JDDGAC_26965 0.17 -0.3 5,166,370 + ais JDDGAC_26965 0.39 +1.9 5,166,371 - ais JDDGAC_26965 0.39 +0.2 5,166,371 - ais JDDGAC_26965 0.39 +0.4 5,166,371 - ais JDDGAC_26965 0.39 +1.1 5,166,458 - ais JDDGAC_26965 0.53 -0.2 5,166,567 + ais JDDGAC_26965 0.71 -1.3 5,166,626 + ais JDDGAC_26965 0.81 +0.9 5,166,627 - ais JDDGAC_26965 0.81 -2.0 5,166,627 - ais JDDGAC_26965 0.81 +1.9 5,166,628 + ais JDDGAC_26965 0.81 +0.6 5,166,640 + ais JDDGAC_26965 0.83 +0.7 5,166,669 - ais JDDGAC_26965 0.88 +1.2 5,166,711 - +0.8 5,166,830 + nudI JDDGAC_26970 0.12 -0.1 5,166,864 - nudI JDDGAC_26970 0.20 -0.2 5,166,864 - nudI JDDGAC_26970 0.20 -0.7 5,166,926 + nudI JDDGAC_26970 0.35 +0.7 5,166,963 - nudI JDDGAC_26970 0.43 -0.3 5,166,963 - nudI JDDGAC_26970 0.43 +0.7 5,166,963 - nudI JDDGAC_26970 0.43 +0.4 5,166,978 + nudI JDDGAC_26970 0.47 +0.0 5,167,155 - nudI JDDGAC_26970 0.88 -0.0 5,167,183 + -0.2 5,167,188 + -1.1 5,167,189 - +0.4 5,167,219 - +0.1 5,167,219 - +0.3 5,167,241 + +0.8 5,167,257 + -0.9 5,167,273 + +2.1 5,167,292 - +0.3 5,167,302 - +1.7 5,167,304 + -0.8 5,167,305 - -0.8 5,167,429 + +1.1 5,167,458 + -0.2 5,167,735 - yfaZ JDDGAC_26975 0.47 -0.6 5,167,735 - yfaZ JDDGAC_26975 0.47 +0.5
Or see this region's nucleotide sequence