Strain Fitness in Pseudomonas sp. RS175 around PFR28_01811

Experiment: L-Valine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01810 and PFR28_01811 overlap by 4 nucleotidesPFR28_01811 and PFR28_01812 are separated by 178 nucleotidesPFR28_01812 and PFR28_01813 are separated by 150 nucleotides PFR28_01810: PFR28_01810 - hypothetical protein, at 2,029,488 to 2,030,747 _01810 PFR28_01811: PFR28_01811 - Transcriptional activator protein ExaE, at 2,030,744 to 2,031,382 _01811 PFR28_01812: PFR28_01812 - hypothetical protein, at 2,031,561 to 2,032,205 _01812 PFR28_01813: PFR28_01813 - Quinoprotein alcohol dehydrogenase (cytochrome c), at 2,032,356 to 2,034,230 _01813 Position (kb) 2030 2031 2032Strain fitness (log2 ratio) -3 -2 -1 0 1at 2030.112 kb on - strand, within PFR28_01810at 2030.159 kb on + strand, within PFR28_01810at 2030.159 kb on + strand, within PFR28_01810at 2030.159 kb on + strand, within PFR28_01810at 2030.159 kb on + strand, within PFR28_01810at 2030.160 kb on - strand, within PFR28_01810at 2030.160 kb on - strand, within PFR28_01810at 2030.160 kb on - strand, within PFR28_01810at 2030.199 kb on + strand, within PFR28_01810at 2030.199 kb on + strand, within PFR28_01810at 2030.199 kb on + strand, within PFR28_01810at 2030.199 kb on + strand, within PFR28_01810at 2030.199 kb on + strand, within PFR28_01810at 2030.200 kb on - strand, within PFR28_01810at 2030.200 kb on - strand, within PFR28_01810at 2030.200 kb on - strand, within PFR28_01810at 2030.340 kb on + strand, within PFR28_01810at 2030.341 kb on - strand, within PFR28_01810at 2030.341 kb on - strand, within PFR28_01810at 2031.009 kb on + strand, within PFR28_01811at 2031.010 kb on - strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.110 kb on + strand, within PFR28_01811at 2031.111 kb on - strand, within PFR28_01811at 2031.111 kb on - strand, within PFR28_01811at 2031.111 kb on - strand, within PFR28_01811at 2031.111 kb on - strand, within PFR28_01811at 2031.111 kb on - strand, within PFR28_01811at 2031.525 kb on + strandat 2031.525 kb on + strandat 2031.526 kb on - strandat 2031.814 kb on + strand, within PFR28_01812at 2031.814 kb on + strand, within PFR28_01812at 2031.815 kb on - strand, within PFR28_01812at 2031.960 kb on + strand, within PFR28_01812at 2031.960 kb on + strand, within PFR28_01812at 2031.960 kb on + strand, within PFR28_01812at 2031.960 kb on + strand, within PFR28_01812at 2031.960 kb on + strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2031.961 kb on - strand, within PFR28_01812at 2032.163 kb on + strandat 2032.163 kb on + strandat 2032.163 kb on + strandat 2032.164 kb on - strandat 2032.164 kb on - strandat 2032.164 kb on - strandat 2032.164 kb on - strandat 2032.164 kb on - strandat 2032.185 kb on + strandat 2032.185 kb on + strandat 2032.186 kb on - strandat 2032.186 kb on - strandat 2032.186 kb on - strandat 2032.186 kb on - strandat 2032.186 kb on - strandat 2032.186 kb on - strandat 2032.198 kb on + strandat 2032.198 kb on + strandat 2032.199 kb on - strandat 2032.199 kb on - strandat 2032.199 kb on - strandat 2032.241 kb on - strandat 2032.271 kb on + strandat 2032.272 kb on - strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.326 kb on + strandat 2032.327 kb on - strandat 2032.327 kb on - strandat 2032.327 kb on - strandat 2032.327 kb on - strandat 2032.327 kb on - strandat 2032.328 kb on + strandat 2032.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM
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2,030,112 - PFR28_01810 0.50 -0.4
2,030,159 + PFR28_01810 0.53 -0.4
2,030,159 + PFR28_01810 0.53 +1.3
2,030,159 + PFR28_01810 0.53 -2.5
2,030,159 + PFR28_01810 0.53 -0.4
2,030,160 - PFR28_01810 0.53 -0.5
2,030,160 - PFR28_01810 0.53 +0.3
2,030,160 - PFR28_01810 0.53 +1.3
2,030,199 + PFR28_01810 0.56 -1.5
2,030,199 + PFR28_01810 0.56 +0.2
2,030,199 + PFR28_01810 0.56 +1.3
2,030,199 + PFR28_01810 0.56 -1.0
2,030,199 + PFR28_01810 0.56 -0.5
2,030,200 - PFR28_01810 0.57 -1.2
2,030,200 - PFR28_01810 0.57 +0.1
2,030,200 - PFR28_01810 0.57 +1.5
2,030,340 + PFR28_01810 0.68 +1.3
2,030,341 - PFR28_01810 0.68 -2.2
2,030,341 - PFR28_01810 0.68 +0.3
2,031,009 + PFR28_01811 0.41 +0.4
2,031,010 - PFR28_01811 0.42 +0.6
2,031,110 + PFR28_01811 0.57 -0.6
2,031,110 + PFR28_01811 0.57 +0.4
2,031,110 + PFR28_01811 0.57 +0.1
2,031,110 + PFR28_01811 0.57 -0.8
2,031,110 + PFR28_01811 0.57 -2.2
2,031,110 + PFR28_01811 0.57 +0.3
2,031,110 + PFR28_01811 0.57 +0.8
2,031,111 - PFR28_01811 0.57 -0.7
2,031,111 - PFR28_01811 0.57 -0.8
2,031,111 - PFR28_01811 0.57 +0.3
2,031,111 - PFR28_01811 0.57 +0.3
2,031,111 - PFR28_01811 0.57 +0.2
2,031,525 + +0.3
2,031,525 + -0.5
2,031,526 - -0.5
2,031,814 + PFR28_01812 0.39 +0.5
2,031,814 + PFR28_01812 0.39 -1.1
2,031,815 - PFR28_01812 0.39 +1.0
2,031,960 + PFR28_01812 0.62 +0.2
2,031,960 + PFR28_01812 0.62 +1.2
2,031,960 + PFR28_01812 0.62 +0.3
2,031,960 + PFR28_01812 0.62 -0.4
2,031,960 + PFR28_01812 0.62 -2.8
2,031,961 - PFR28_01812 0.62 -2.7
2,031,961 - PFR28_01812 0.62 +0.6
2,031,961 - PFR28_01812 0.62 +0.6
2,031,961 - PFR28_01812 0.62 -0.9
2,031,961 - PFR28_01812 0.62 +0.8
2,031,961 - PFR28_01812 0.62 -0.7
2,032,163 + -0.9
2,032,163 + -0.3
2,032,163 + -0.6
2,032,164 - -2.7
2,032,164 - +0.2
2,032,164 - +1.3
2,032,164 - -2.2
2,032,164 - -0.1
2,032,185 + -0.4
2,032,185 + -0.6
2,032,186 - -0.2
2,032,186 - -0.2
2,032,186 - -0.8
2,032,186 - +0.5
2,032,186 - +1.0
2,032,186 - -0.6
2,032,198 + +0.2
2,032,198 + +0.4
2,032,199 - +1.2
2,032,199 - +0.3
2,032,199 - +1.2
2,032,241 - -0.7
2,032,271 + -0.7
2,032,272 - +0.5
2,032,326 + +0.3
2,032,326 + -1.7
2,032,326 + +0.8
2,032,326 + +1.2
2,032,326 + +0.1
2,032,326 + +0.8
2,032,326 + -0.2
2,032,326 + -1.0
2,032,326 + -1.0
2,032,326 + +0.7
2,032,327 - -1.7
2,032,327 - -0.4
2,032,327 - +0.1
2,032,327 - +1.3
2,032,327 - -0.9
2,032,328 + -0.1
2,032,329 - +0.4

Or see this region's nucleotide sequence