Experiment: L-Valine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01810 and PFR28_01811 overlap by 4 nucleotides PFR28_01811 and PFR28_01812 are separated by 178 nucleotides PFR28_01812 and PFR28_01813 are separated by 150 nucleotides
PFR28_01810: PFR28_01810 - hypothetical protein, at 2,029,488 to 2,030,747
_01810
PFR28_01811: PFR28_01811 - Transcriptional activator protein ExaE, at 2,030,744 to 2,031,382
_01811
PFR28_01812: PFR28_01812 - hypothetical protein, at 2,031,561 to 2,032,205
_01812
PFR28_01813: PFR28_01813 - Quinoprotein alcohol dehydrogenase (cytochrome c), at 2,032,356 to 2,034,230
_01813
Position (kb)
2030
2031
2032 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2030.112 kb on - strand, within PFR28_01810 at 2030.159 kb on + strand, within PFR28_01810 at 2030.159 kb on + strand, within PFR28_01810 at 2030.159 kb on + strand, within PFR28_01810 at 2030.159 kb on + strand, within PFR28_01810 at 2030.160 kb on - strand, within PFR28_01810 at 2030.160 kb on - strand, within PFR28_01810 at 2030.160 kb on - strand, within PFR28_01810 at 2030.199 kb on + strand, within PFR28_01810 at 2030.199 kb on + strand, within PFR28_01810 at 2030.199 kb on + strand, within PFR28_01810 at 2030.199 kb on + strand, within PFR28_01810 at 2030.199 kb on + strand, within PFR28_01810 at 2030.200 kb on - strand, within PFR28_01810 at 2030.200 kb on - strand, within PFR28_01810 at 2030.200 kb on - strand, within PFR28_01810 at 2030.340 kb on + strand, within PFR28_01810 at 2030.341 kb on - strand, within PFR28_01810 at 2030.341 kb on - strand, within PFR28_01810 at 2031.009 kb on + strand, within PFR28_01811 at 2031.010 kb on - strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.110 kb on + strand, within PFR28_01811 at 2031.111 kb on - strand, within PFR28_01811 at 2031.111 kb on - strand, within PFR28_01811 at 2031.111 kb on - strand, within PFR28_01811 at 2031.111 kb on - strand, within PFR28_01811 at 2031.111 kb on - strand, within PFR28_01811 at 2031.525 kb on + strand at 2031.525 kb on + strand at 2031.526 kb on - strand at 2031.814 kb on + strand, within PFR28_01812 at 2031.814 kb on + strand, within PFR28_01812 at 2031.815 kb on - strand, within PFR28_01812 at 2031.960 kb on + strand, within PFR28_01812 at 2031.960 kb on + strand, within PFR28_01812 at 2031.960 kb on + strand, within PFR28_01812 at 2031.960 kb on + strand, within PFR28_01812 at 2031.960 kb on + strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2031.961 kb on - strand, within PFR28_01812 at 2032.163 kb on + strand at 2032.163 kb on + strand at 2032.163 kb on + strand at 2032.164 kb on - strand at 2032.164 kb on - strand at 2032.164 kb on - strand at 2032.164 kb on - strand at 2032.164 kb on - strand at 2032.185 kb on + strand at 2032.185 kb on + strand at 2032.186 kb on - strand at 2032.186 kb on - strand at 2032.186 kb on - strand at 2032.186 kb on - strand at 2032.186 kb on - strand at 2032.186 kb on - strand at 2032.198 kb on + strand at 2032.198 kb on + strand at 2032.199 kb on - strand at 2032.199 kb on - strand at 2032.199 kb on - strand at 2032.241 kb on - strand at 2032.271 kb on + strand at 2032.272 kb on - strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.326 kb on + strand at 2032.327 kb on - strand at 2032.327 kb on - strand at 2032.327 kb on - strand at 2032.327 kb on - strand at 2032.327 kb on - strand at 2032.328 kb on + strand at 2032.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM remove 2,030,112 - PFR28_01810 0.50 -0.4 2,030,159 + PFR28_01810 0.53 -0.4 2,030,159 + PFR28_01810 0.53 +1.3 2,030,159 + PFR28_01810 0.53 -2.5 2,030,159 + PFR28_01810 0.53 -0.4 2,030,160 - PFR28_01810 0.53 -0.5 2,030,160 - PFR28_01810 0.53 +0.3 2,030,160 - PFR28_01810 0.53 +1.3 2,030,199 + PFR28_01810 0.56 -1.5 2,030,199 + PFR28_01810 0.56 +0.2 2,030,199 + PFR28_01810 0.56 +1.3 2,030,199 + PFR28_01810 0.56 -1.0 2,030,199 + PFR28_01810 0.56 -0.5 2,030,200 - PFR28_01810 0.57 -1.2 2,030,200 - PFR28_01810 0.57 +0.1 2,030,200 - PFR28_01810 0.57 +1.5 2,030,340 + PFR28_01810 0.68 +1.3 2,030,341 - PFR28_01810 0.68 -2.2 2,030,341 - PFR28_01810 0.68 +0.3 2,031,009 + PFR28_01811 0.41 +0.4 2,031,010 - PFR28_01811 0.42 +0.6 2,031,110 + PFR28_01811 0.57 -0.6 2,031,110 + PFR28_01811 0.57 +0.4 2,031,110 + PFR28_01811 0.57 +0.1 2,031,110 + PFR28_01811 0.57 -0.8 2,031,110 + PFR28_01811 0.57 -2.2 2,031,110 + PFR28_01811 0.57 +0.3 2,031,110 + PFR28_01811 0.57 +0.8 2,031,111 - PFR28_01811 0.57 -0.7 2,031,111 - PFR28_01811 0.57 -0.8 2,031,111 - PFR28_01811 0.57 +0.3 2,031,111 - PFR28_01811 0.57 +0.3 2,031,111 - PFR28_01811 0.57 +0.2 2,031,525 + +0.3 2,031,525 + -0.5 2,031,526 - -0.5 2,031,814 + PFR28_01812 0.39 +0.5 2,031,814 + PFR28_01812 0.39 -1.1 2,031,815 - PFR28_01812 0.39 +1.0 2,031,960 + PFR28_01812 0.62 +0.2 2,031,960 + PFR28_01812 0.62 +1.2 2,031,960 + PFR28_01812 0.62 +0.3 2,031,960 + PFR28_01812 0.62 -0.4 2,031,960 + PFR28_01812 0.62 -2.8 2,031,961 - PFR28_01812 0.62 -2.7 2,031,961 - PFR28_01812 0.62 +0.6 2,031,961 - PFR28_01812 0.62 +0.6 2,031,961 - PFR28_01812 0.62 -0.9 2,031,961 - PFR28_01812 0.62 +0.8 2,031,961 - PFR28_01812 0.62 -0.7 2,032,163 + -0.9 2,032,163 + -0.3 2,032,163 + -0.6 2,032,164 - -2.7 2,032,164 - +0.2 2,032,164 - +1.3 2,032,164 - -2.2 2,032,164 - -0.1 2,032,185 + -0.4 2,032,185 + -0.6 2,032,186 - -0.2 2,032,186 - -0.2 2,032,186 - -0.8 2,032,186 - +0.5 2,032,186 - +1.0 2,032,186 - -0.6 2,032,198 + +0.2 2,032,198 + +0.4 2,032,199 - +1.2 2,032,199 - +0.3 2,032,199 - +1.2 2,032,241 - -0.7 2,032,271 + -0.7 2,032,272 - +0.5 2,032,326 + +0.3 2,032,326 + -1.7 2,032,326 + +0.8 2,032,326 + +1.2 2,032,326 + +0.1 2,032,326 + +0.8 2,032,326 + -0.2 2,032,326 + -1.0 2,032,326 + -1.0 2,032,326 + +0.7 2,032,327 - -1.7 2,032,327 - -0.4 2,032,327 - +0.1 2,032,327 - +1.3 2,032,327 - -0.9 2,032,328 + -0.1 2,032,329 - +0.4
Or see this region's nucleotide sequence