Strain Fitness in Pseudomonas sp. RS175 around PFR28_01152

Experiment: L-Valine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C) 10 mM
1,268,914	+				+0.0
1,268,914	+				-1.6
1,268,914	+				-0.0
1,268,914	+				+0.5
1,268,949	+				+0.1
1,269,134	+		PFR28_01151	0.23	+0.2
1,269,134	+		PFR28_01151	0.23	-0.7
1,269,194	+		PFR28_01151	0.30	+0.6
1,269,250	+		PFR28_01151	0.37	-0.3
1,269,406	+		PFR28_01151	0.56	+0.2
1,269,406	+		PFR28_01151	0.56	-1.4
1,269,406	+		PFR28_01151	0.56	-0.3
1,269,406	+		PFR28_01151	0.56	+0.5
1,269,408	+		PFR28_01151	0.57	-0.3
1,269,408	+		PFR28_01151	0.57	-0.2
1,269,408	+		PFR28_01151	0.57	-0.9
1,269,530	+		PFR28_01151	0.71	+0.2
1,269,714	+				-0.8
1,269,714	+				-0.1
1,269,715	-				-0.9
1,270,721	-		PFR28_01152	0.34	+0.7
1,270,746	+		PFR28_01152	0.35	+0.8
1,270,866	+		PFR28_01152	0.39	-0.1
1,270,866	+		PFR28_01152	0.39	+1.8
1,270,867	-		PFR28_01152	0.39	+0.4
1,270,869	+		PFR28_01152	0.40	+0.3
1,270,869	+		PFR28_01152	0.40	-0.9
1,270,870	-		PFR28_01152	0.40	+0.4
1,270,872	+		PFR28_01152	0.40	-0.9
1,270,900	+		PFR28_01152	0.41	+0.5
1,270,900	+		PFR28_01152	0.41	-1.3
1,270,900	+		PFR28_01152	0.41	+1.3
1,270,900	+		PFR28_01152	0.41	+0.4
1,270,901	-		PFR28_01152	0.41	+1.6
1,270,925	-		PFR28_01152	0.42	+3.0
1,271,025	+		PFR28_01152	0.45	-1.7
1,271,026	-		PFR28_01152	0.45	-0.4
1,271,062	+		PFR28_01152	0.47	-0.3
1,271,062	+		PFR28_01152	0.47	-0.3
1,271,062	+		PFR28_01152	0.47	+2.5
1,271,062	+		PFR28_01152	0.47	-2.0
1,271,062	+		PFR28_01152	0.47	+0.4
1,271,063	-		PFR28_01152	0.47	+0.9
1,271,246	+		PFR28_01152	0.53	-0.1
1,271,246	+		PFR28_01152	0.53	+0.8
1,271,246	+		PFR28_01152	0.53	+0.6
1,271,247	-		PFR28_01152	0.53	-2.6
1,271,287	+		PFR28_01152	0.55	-0.4
1,271,287	+		PFR28_01152	0.55	+0.1
1,271,287	+		PFR28_01152	0.55	-0.4
1,271,287	+		PFR28_01152	0.55	+0.2
1,271,288	-		PFR28_01152	0.55	-1.7
1,271,288	-		PFR28_01152	0.55	+0.5
1,271,290	+		PFR28_01152	0.55	-0.7
1,271,290	+		PFR28_01152	0.55	-0.1
1,271,290	+		PFR28_01152	0.55	+1.1
1,271,290	+		PFR28_01152	0.55	+0.2
1,271,290	+		PFR28_01152	0.55	-2.8
1,271,290	+		PFR28_01152	0.55	+1.0
1,271,290	+		PFR28_01152	0.55	-1.3
1,271,291	-		PFR28_01152	0.55	+1.4
1,271,323	+		PFR28_01152	0.56	-0.9
1,271,323	+		PFR28_01152	0.56	-0.4
1,271,323	+		PFR28_01152	0.56	+0.7
1,271,323	+		PFR28_01152	0.56	-0.5
1,271,323	+		PFR28_01152	0.56	+1.9
1,271,324	-		PFR28_01152	0.56	-0.6
1,271,324	-		PFR28_01152	0.56	+2.1
1,271,324	-		PFR28_01152	0.56	-0.6
1,271,324	-		PFR28_01152	0.56	+0.7
1,271,327	-		PFR28_01152	0.56	+1.1
1,271,389	+		PFR28_01152	0.59	-0.7
1,271,389	+		PFR28_01152	0.59	+0.9
1,271,389	+		PFR28_01152	0.59	-0.7
1,271,389	+		PFR28_01152	0.59	+0.0
1,271,390	-		PFR28_01152	0.59	+0.6
1,271,464	+		PFR28_01152	0.61	-0.4
1,271,465	-		PFR28_01152	0.61	+0.1
1,271,465	-		PFR28_01152	0.61	+0.9
1,271,491	-		PFR28_01152	0.62	-0.5
1,271,492	-		PFR28_01152	0.62	+1.3
1,271,542	+		PFR28_01152	0.64	+0.3
1,271,816	+		PFR28_01152	0.74	+1.4
1,271,816	+		PFR28_01152	0.74	+1.2
1,271,816	+		PFR28_01152	0.74	+0.9
1,271,820	+		PFR28_01152	0.74	-0.2
1,271,820	+		PFR28_01152	0.74	-0.4
1,271,820	+		PFR28_01152	0.74	-0.6
1,272,016	+		PFR28_01152	0.82	-0.6
1,272,016	+		PFR28_01152	0.82	+1.8
1,272,016	+		PFR28_01152	0.82	+0.9
1,272,016	+		PFR28_01152	0.82	+0.6
1,272,163	+		PFR28_01152	0.87	-0.6
1,272,226	+		PFR28_01152	0.89	-0.2
1,272,226	+		PFR28_01152	0.89	+0.5
1,272,226	+		PFR28_01152	0.89	+1.0
1,272,260	+				+0.9
1,272,260	+				-2.4
1,272,260	+				-0.4
1,272,261	-				+0.7
1,272,261	-				-1.5
1,272,261	-				+1.0
1,272,261	-				+0.8
1,272,291	+				+0.7
1,272,291	+				-1.8
1,272,291	+				-2.5
1,272,291	+				+0.0
1,272,291	+				+0.7
1,272,291	+				-1.3
1,272,292	-				+0.8
1,272,292	-				+1.1
1,272,292	-				-1.1
1,272,292	-				-0.4
1,272,292	-				-0.8
1,272,301	+				-1.7
1,272,312	+				+0.1
1,272,312	+				-0.6
1,272,313	-				+1.4
1,272,313	-				+0.5
1,272,382	+				-0.3
1,272,382	+				-0.7
1,272,382	+				-1.1
1,272,383	-				+2.3
1,272,383	-				-0.1
1,272,433	+				+0.7
1,272,433	+				+0.0
1,272,433	+				-1.6
1,272,433	+				-1.1
1,272,433	+				+0.4
1,272,433	+				+0.0
1,272,433	+				+0.6
1,272,433	+				-1.2
1,272,434	-				+0.0
1,272,434	-				+0.9
1,272,434	-				+1.2
1,272,463	+				+0.1
1,272,526	+				+1.7
1,272,526	+				-0.7
1,272,526	+				+1.1
1,272,526	+				+1.1
1,272,527	-				-0.8
1,272,618	+		PFR28_01153	0.40	-0.4
1,272,679	+		PFR28_01153	0.66	+0.2
1,272,824	+				+0.4
1,272,888	+		PFR28_01154	0.15	-0.1
1,273,056	+		PFR28_01154	0.60	+0.3
1,273,057	-		PFR28_01154	0.60	-1.6
1,273,076	+		PFR28_01154	0.65	+0.8
1,273,076	+		PFR28_01154	0.65	-1.0
1,273,076	+		PFR28_01154	0.65	-1.1
1,273,076	+		PFR28_01154	0.65	-2.6
1,273,076	+		PFR28_01154	0.65	+0.7
1,273,077	-		PFR28_01154	0.65	-2.9
1,273,096	+		PFR28_01154	0.70	+0.1
1,273,096	+		PFR28_01154	0.70	+2.0
1,273,096	+		PFR28_01154	0.70	+0.9
1,273,097	-		PFR28_01154	0.71	-6.3
1,273,097	-		PFR28_01154	0.71	-4.5
1,273,097	-		PFR28_01154	0.71	-0.1
1,273,097	-		PFR28_01154	0.71	-0.6
1,273,298	+		PFR28_01155	0.33	-1.0
1,273,401	+		PFR28_01155	0.68	+0.7
1,273,401	+		PFR28_01155	0.68	-0.1
1,273,482	+				+0.3
1,273,482	+				+0.2
1,273,482	+				+0.8
1,273,482	+				+0.0
1,273,482	+				+0.1
1,273,482	+				+0.4
1,273,482	+				+0.1
1,273,483	-				-4.2
1,273,483	-				-5.5
1,273,483	-				-3.6
1,273,483	-				+1.4
1,273,483	-				+1.4
1,273,483	-				-4.4
1,273,483	-				-5.0
1,273,483	-				-1.6