Strain Fitness in Escherichia coli ECRC101 around MCAODC_17155

Experiment: GB_TP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_17145 and MCAODC_17150 overlap by 4 nucleotidesMCAODC_17150 and MCAODC_17155 are separated by 347 nucleotidesMCAODC_17155 and MCAODC_17160 overlap by 8 nucleotidesMCAODC_17160 and MCAODC_17165 overlap by 4 nucleotidesMCAODC_17165 and MCAODC_17170 are separated by 32 nucleotides MCAODC_17145: MCAODC_17145 - Bacteriophage protein, at 325,289 to 325,372 _17145 MCAODC_17150: MCAODC_17150 - DUF551 domain-containing protein, at 325,369 to 325,926 _17150 MCAODC_17155: MCAODC_17155 - Prophage protein, at 326,274 to 326,585 _17155 MCAODC_17160: MCAODC_17160 - hypothetical protein, at 326,578 to 326,805 _17160 MCAODC_17165: MCAODC_17165 - DNA-binding protein, at 326,802 to 327,083 _17165 MCAODC_17170: MCAODC_17170 - DUF1627 domain-containing protein, at 327,116 to 327,832 _17170 Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 325.312 kb on - strand, within MCAODC_17145at 325.450 kb on + strand, within MCAODC_17150at 325.451 kb on - strand, within MCAODC_17150at 325.453 kb on - strand, within MCAODC_17150at 325.496 kb on - strand, within MCAODC_17150at 325.496 kb on - strand, within MCAODC_17150at 325.499 kb on - strand, within MCAODC_17150at 325.533 kb on + strand, within MCAODC_17150at 325.534 kb on - strand, within MCAODC_17150at 325.534 kb on - strand, within MCAODC_17150at 325.595 kb on - strand, within MCAODC_17150at 325.716 kb on - strand, within MCAODC_17150at 325.825 kb on - strand, within MCAODC_17150at 325.887 kb on - strandat 325.915 kb on - strandat 325.994 kb on - strandat 325.996 kb on - strandat 325.997 kb on + strandat 325.997 kb on + strandat 325.997 kb on + strandat 325.998 kb on - strandat 325.998 kb on - strandat 326.043 kb on - strandat 326.072 kb on + strandat 326.073 kb on - strandat 326.073 kb on - strandat 326.246 kb on + strandat 326.388 kb on - strand, within MCAODC_17155at 326.444 kb on - strand, within MCAODC_17155at 326.613 kb on - strand, within MCAODC_17160at 326.642 kb on + strand, within MCAODC_17160at 326.643 kb on - strand, within MCAODC_17160at 326.643 kb on - strand, within MCAODC_17160at 326.643 kb on - strand, within MCAODC_17160at 326.645 kb on - strand, within MCAODC_17160at 326.784 kb on - strandat 326.793 kb on - strandat 326.833 kb on + strand, within MCAODC_17165at 326.845 kb on - strand, within MCAODC_17165at 326.845 kb on - strand, within MCAODC_17165at 326.967 kb on + strand, within MCAODC_17165at 326.967 kb on + strand, within MCAODC_17165at 326.968 kb on - strand, within MCAODC_17165at 326.968 kb on - strand, within MCAODC_17165at 327.048 kb on + strand, within MCAODC_17165at 327.049 kb on - strand, within MCAODC_17165at 327.049 kb on - strand, within MCAODC_17165at 327.078 kb on + strandat 327.078 kb on + strandat 327.078 kb on + strandat 327.146 kb on - strandat 327.554 kb on - strand, within MCAODC_17170

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_TP3
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325,312 - MCAODC_17145 0.27 -1.3
325,450 + MCAODC_17150 0.15 +1.8
325,451 - MCAODC_17150 0.15 +1.1
325,453 - MCAODC_17150 0.15 -0.0
325,496 - MCAODC_17150 0.23 -1.8
325,496 - MCAODC_17150 0.23 -0.3
325,499 - MCAODC_17150 0.23 -1.3
325,533 + MCAODC_17150 0.29 -1.4
325,534 - MCAODC_17150 0.30 +1.4
325,534 - MCAODC_17150 0.30 -0.9
325,595 - MCAODC_17150 0.41 +2.4
325,716 - MCAODC_17150 0.62 -0.1
325,825 - MCAODC_17150 0.82 -2.2
325,887 - -0.0
325,915 - +1.0
325,994 - -1.0
325,996 - -1.7
325,997 + +2.3
325,997 + +0.6
325,997 + +1.2
325,998 - +0.5
325,998 - -0.8
326,043 - +0.8
326,072 + -0.2
326,073 - -2.2
326,073 - -1.4
326,246 + +1.4
326,388 - MCAODC_17155 0.37 +2.8
326,444 - MCAODC_17155 0.54 -1.3
326,613 - MCAODC_17160 0.15 +0.0
326,642 + MCAODC_17160 0.28 -0.3
326,643 - MCAODC_17160 0.29 -0.2
326,643 - MCAODC_17160 0.29 -0.8
326,643 - MCAODC_17160 0.29 -0.8
326,645 - MCAODC_17160 0.29 -0.4
326,784 - -0.2
326,793 - -1.3
326,833 + MCAODC_17165 0.11 -0.0
326,845 - MCAODC_17165 0.15 +0.8
326,845 - MCAODC_17165 0.15 +0.1
326,967 + MCAODC_17165 0.59 +0.4
326,967 + MCAODC_17165 0.59 -0.3
326,968 - MCAODC_17165 0.59 -2.7
326,968 - MCAODC_17165 0.59 +1.8
327,048 + MCAODC_17165 0.87 -0.0
327,049 - MCAODC_17165 0.88 +1.1
327,049 - MCAODC_17165 0.88 -1.4
327,078 + +0.8
327,078 + -1.6
327,078 + +1.2
327,146 - -2.2
327,554 - MCAODC_17170 0.61 -1.5

Or see this region's nucleotide sequence