Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29405 and JDDGAC_29410 are separated by 21 nucleotides JDDGAC_29410 and JDDGAC_29415 overlap by 4 nucleotides JDDGAC_29415 and JDDGAC_29420 are separated by 32 nucleotides JDDGAC_29420 and JDDGAC_29425 overlap by 4 nucleotides JDDGAC_29425 and JDDGAC_29430 are separated by 126 nucleotides JDDGAC_29430 and JDDGAC_29435 are separated by 109 nucleotides
JDDGAC_29405: JDDGAC_29405 - DUF1627 domain-containing protein, at 5,612,782 to 5,613,480
_29405
JDDGAC_29410: JDDGAC_29410 - hypothetical protein, at 5,613,502 to 5,613,726
_29410
JDDGAC_29415: JDDGAC_29415 - Eae-like protein, at 5,613,723 to 5,614,079
_29415
JDDGAC_29420: JDDGAC_29420 - hypothetical protein, at 5,614,112 to 5,614,264
_29420
JDDGAC_29425: JDDGAC_29425 - Prophage protein, at 5,614,261 to 5,614,572
_29425
JDDGAC_29430: JDDGAC_29430 - DUF551 domain-containing protein, at 5,614,699 to 5,615,262
_29430
JDDGAC_29435: JDDGAC_29435 - hypothetical protein, at 5,615,372 to 5,615,476
_29435
Position (kb) 5614
5615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5613.432 kb on + strand at 5613.432 kb on + strand at 5613.540 kb on + strand, within JDDGAC_29410 at 5613.540 kb on + strand, within JDDGAC_29410 at 5613.540 kb on + strand, within JDDGAC_29410 at 5613.540 kb on + strand, within JDDGAC_29410 at 5613.541 kb on - strand, within JDDGAC_29410 at 5613.541 kb on - strand, within JDDGAC_29410 at 5613.541 kb on - strand, within JDDGAC_29410 at 5613.541 kb on - strand, within JDDGAC_29410 at 5613.541 kb on - strand, within JDDGAC_29410 at 5613.546 kb on + strand, within JDDGAC_29410 at 5613.547 kb on - strand, within JDDGAC_29410 at 5613.734 kb on + strand at 5613.863 kb on + strand, within JDDGAC_29415 at 5613.863 kb on + strand, within JDDGAC_29415 at 5613.912 kb on + strand, within JDDGAC_29415 at 5613.912 kb on + strand, within JDDGAC_29415 at 5613.912 kb on + strand, within JDDGAC_29415 at 5613.924 kb on + strand, within JDDGAC_29415 at 5613.924 kb on + strand, within JDDGAC_29415 at 5613.925 kb on - strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.033 kb on + strand, within JDDGAC_29415 at 5614.034 kb on - strand, within JDDGAC_29415 at 5614.034 kb on - strand, within JDDGAC_29415 at 5614.081 kb on + strand at 5614.131 kb on - strand, within JDDGAC_29420 at 5614.300 kb on + strand, within JDDGAC_29425 at 5614.514 kb on + strand, within JDDGAC_29425 at 5614.544 kb on + strand at 5614.579 kb on + strand at 5614.766 kb on + strand, within JDDGAC_29430 at 5614.869 kb on - strand, within JDDGAC_29430 at 5615.196 kb on + strand, within JDDGAC_29430 at 5615.235 kb on - strand at 5615.292 kb on - strand at 5615.293 kb on + strand at 5615.293 kb on + strand at 5615.293 kb on + strand at 5615.294 kb on - strand at 5615.294 kb on - strand at 5615.294 kb on - strand at 5615.297 kb on + strand at 5615.297 kb on + strand at 5615.297 kb on + strand at 5615.298 kb on - strand at 5615.298 kb on - strand at 5615.309 kb on - strand at 5615.309 kb on - strand at 5615.312 kb on - strand at 5615.314 kb on - strand at 5615.319 kb on - strand at 5615.319 kb on - strand at 5615.383 kb on + strand, within JDDGAC_29435
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 5,613,432 + +0.7 5,613,432 + +1.4 5,613,540 + JDDGAC_29410 0.17 -0.3 5,613,540 + JDDGAC_29410 0.17 +1.3 5,613,540 + JDDGAC_29410 0.17 -1.9 5,613,540 + JDDGAC_29410 0.17 +1.0 5,613,541 - JDDGAC_29410 0.17 +1.6 5,613,541 - JDDGAC_29410 0.17 +0.2 5,613,541 - JDDGAC_29410 0.17 -0.8 5,613,541 - JDDGAC_29410 0.17 +0.1 5,613,541 - JDDGAC_29410 0.17 -0.5 5,613,546 + JDDGAC_29410 0.20 -0.2 5,613,547 - JDDGAC_29410 0.20 -0.0 5,613,734 + +1.1 5,613,863 + JDDGAC_29415 0.39 -2.2 5,613,863 + JDDGAC_29415 0.39 -0.0 5,613,912 + JDDGAC_29415 0.53 -1.0 5,613,912 + JDDGAC_29415 0.53 +0.1 5,613,912 + JDDGAC_29415 0.53 +1.8 5,613,924 + JDDGAC_29415 0.56 -0.3 5,613,924 + JDDGAC_29415 0.56 +0.2 5,613,925 - JDDGAC_29415 0.57 -0.7 5,614,033 + JDDGAC_29415 0.87 -0.3 5,614,033 + JDDGAC_29415 0.87 +0.1 5,614,033 + JDDGAC_29415 0.87 -0.4 5,614,033 + JDDGAC_29415 0.87 +1.0 5,614,033 + JDDGAC_29415 0.87 +0.5 5,614,033 + JDDGAC_29415 0.87 -1.4 5,614,034 - JDDGAC_29415 0.87 -0.1 5,614,034 - JDDGAC_29415 0.87 +0.6 5,614,081 + -0.1 5,614,131 - JDDGAC_29420 0.12 -0.1 5,614,300 + JDDGAC_29425 0.12 -2.4 5,614,514 + JDDGAC_29425 0.81 +0.3 5,614,544 + -0.1 5,614,579 + -0.3 5,614,766 + JDDGAC_29430 0.12 -1.3 5,614,869 - JDDGAC_29430 0.30 -0.7 5,615,196 + JDDGAC_29430 0.88 -2.3 5,615,235 - +0.8 5,615,292 - -1.6 5,615,293 + -0.4 5,615,293 + -1.2 5,615,293 + +1.1 5,615,294 - -1.0 5,615,294 - -1.4 5,615,294 - -0.0 5,615,297 + +2.9 5,615,297 + -1.1 5,615,297 + +0.1 5,615,298 - -1.4 5,615,298 - -1.1 5,615,309 - -0.3 5,615,309 - -3.1 5,615,312 - +0.2 5,615,314 - +0.7 5,615,319 - -0.6 5,615,319 - -0.5 5,615,383 + JDDGAC_29435 0.10 -0.7
Or see this region's nucleotide sequence