Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20125

Experiment: WM_Lambda

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Lambda
3,858,492	+	hicB	JDDGAC_20115	0.87	-1.5
3,858,496	+	hicB	JDDGAC_20115	0.88	-0.1
3,858,496	+	hicB	JDDGAC_20115	0.88	-3.4
3,858,499	-	hicB	JDDGAC_20115	0.89	+0.7
3,858,535	+				-0.1
3,858,535	+				-2.4
3,858,536	-				+0.1
3,858,542	+				-0.2
3,858,588	+				-0.3
3,858,589	-				-1.7
3,858,641	-				-1.0
3,858,642	+				-0.2
3,858,642	+				-0.9
3,858,643	-				+1.0
3,858,767	-	fba	JDDGAC_20120	0.21	+0.1
3,858,771	-	fba	JDDGAC_20120	0.21	+0.5
3,858,786	+	fba	JDDGAC_20120	0.23	+1.0
3,858,803	+	fba	JDDGAC_20120	0.25	-0.6
3,858,839	-	fba	JDDGAC_20120	0.29	+2.3
3,858,899	+	fba	JDDGAC_20120	0.36	+1.0
3,858,899	+	fba	JDDGAC_20120	0.36	+1.2
3,858,900	-	fba	JDDGAC_20120	0.36	+1.1
3,858,901	+	fba	JDDGAC_20120	0.36	-0.8
3,858,902	-	fba	JDDGAC_20120	0.37	+0.8
3,859,069	-	fba	JDDGAC_20120	0.56	-0.5
3,859,178	-	fba	JDDGAC_20120	0.69	-1.4
3,859,178	-	fba	JDDGAC_20120	0.69	-0.2
3,859,266	+	fba	JDDGAC_20120	0.79	+1.1
3,859,266	+	fba	JDDGAC_20120	0.79	-0.3
3,859,379	-				-1.2
3,859,439	+				-0.8
3,859,447	+				+0.6
3,859,601	+	ptsH	JDDGAC_20125	0.45	-1.4
3,859,626	-	ptsH	JDDGAC_20125	0.54	-0.9
3,859,639	+	ptsH	JDDGAC_20125	0.59	-1.5
3,859,656	-	ptsH	JDDGAC_20125	0.66	-1.3
3,859,748	+				+1.3
3,859,748	+				+0.4
3,859,748	+				+0.6
3,859,768	+				-2.0
3,859,769	-				-0.8
3,859,769	-				+1.7
3,859,769	-				-0.8
3,859,769	-				-1.1
3,859,837	+				-0.2
3,859,838	-				-0.1
3,859,879	+				+0.3
3,859,947	+	xylB	JDDGAC_20130	0.14	-0.3
3,859,948	-	xylB	JDDGAC_20130	0.14	-0.3
3,860,105	-	xylB	JDDGAC_20130	0.24	+0.7
3,860,116	+	xylB	JDDGAC_20130	0.25	+0.5
3,860,131	+	xylB	JDDGAC_20130	0.26	-1.6
3,860,131	+	xylB	JDDGAC_20130	0.26	-0.9
3,860,131	+	xylB	JDDGAC_20130	0.26	+0.6
3,860,132	-	xylB	JDDGAC_20130	0.26	+0.4
3,860,253	-	xylB	JDDGAC_20130	0.34	+2.4
3,860,272	-	xylB	JDDGAC_20130	0.35	-0.3
3,860,385	-	xylB	JDDGAC_20130	0.43	-0.4
3,860,439	+	xylB	JDDGAC_20130	0.46	-1.3
3,860,479	-	xylB	JDDGAC_20130	0.49	-0.1
3,860,523	+	xylB	JDDGAC_20130	0.52	+0.4
3,860,523	+	xylB	JDDGAC_20130	0.52	+0.1
3,860,524	-	xylB	JDDGAC_20130	0.52	+0.2
3,860,524	-	xylB	JDDGAC_20130	0.52	-0.0