Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07050

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and JDDGAC_07050 are separated by 68 nucleotidesJDDGAC_07050 and ydaS overlap by 17 nucleotidesydaS and JDDGAC_07060 are separated by 124 nucleotides JDDGAC_07045: eCs1768 - phage replisome organizer, at 1,217,812 to 1,218,849 eCs1768 JDDGAC_07050: JDDGAC_07050 - Rha family transcriptional regulator, at 1,218,918 to 1,219,343 _07050 JDDGAC_07055: ydaS - transcriptional regulator, at 1,219,327 to 1,219,650 ydaS JDDGAC_07060: JDDGAC_07060 - Prophage repressor RacR, at 1,219,775 to 1,220,251 _07060 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -1 0 1 2at 1218.186 kb on + strand, within eCs1768at 1218.355 kb on - strand, within eCs1768at 1219.216 kb on + strand, within JDDGAC_07050at 1219.435 kb on + strand, within ydaSat 1219.435 kb on + strand, within ydaSat 1219.439 kb on + strand, within ydaSat 1219.534 kb on + strand, within ydaSat 1219.570 kb on + strand, within ydaSat 1219.634 kb on + strandat 1219.635 kb on - strandat 1220.188 kb on + strand, within JDDGAC_07060at 1220.255 kb on + strandat 1220.255 kb on + strandat 1220.255 kb on + strandat 1220.278 kb on + strandat 1220.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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1,218,186 + eCs1768 JDDGAC_07045 0.36 +0.4
1,218,355 - eCs1768 JDDGAC_07045 0.52 -0.6
1,219,216 + JDDGAC_07050 0.70 -1.2
1,219,435 + ydaS JDDGAC_07055 0.33 +0.4
1,219,435 + ydaS JDDGAC_07055 0.33 -0.4
1,219,439 + ydaS JDDGAC_07055 0.35 +0.8
1,219,534 + ydaS JDDGAC_07055 0.64 -0.2
1,219,570 + ydaS JDDGAC_07055 0.75 -0.9
1,219,634 + +2.0
1,219,635 - +1.0
1,220,188 + JDDGAC_07060 0.87 +0.0
1,220,255 + +1.6
1,220,255 + -1.0
1,220,255 + -0.3
1,220,278 + -0.2
1,220,278 + +0.8

Or see this region's nucleotide sequence