Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychH and pth are separated by 277 nucleotides pth and ychF are separated by 116 nucleotides ychF and aidA are separated by 843 nucleotides
JDDGAC_06155: ychH - stress-induced protein YchH, at 1,072,597 to 1,072,875
ychH
JDDGAC_06160: pth - aminoacyl-tRNA hydrolase, at 1,073,153 to 1,073,737
pth
JDDGAC_06165: ychF - redox-regulated ATPase YchF, at 1,073,854 to 1,074,945
ychF
JDDGAC_06170: aidA - autotransporter outer membrane beta-barrel domain-containing protein, at 1,075,789 to 1,078,674
aidA
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1072.926 kb on + strand at 1072.933 kb on - strand at 1072.937 kb on + strand at 1072.959 kb on - strand at 1072.980 kb on + strand at 1072.981 kb on - strand at 1072.981 kb on - strand at 1073.128 kb on - strand at 1073.281 kb on + strand, within pth at 1073.296 kb on + strand, within pth at 1073.635 kb on - strand, within pth at 1073.772 kb on + strand at 1073.772 kb on + strand at 1073.774 kb on + strand at 1074.039 kb on + strand, within ychF at 1074.463 kb on + strand, within ychF at 1074.505 kb on + strand, within ychF at 1074.505 kb on + strand, within ychF at 1074.947 kb on + strand at 1074.952 kb on + strand at 1074.973 kb on + strand at 1075.001 kb on + strand at 1075.175 kb on - strand at 1075.243 kb on - strand at 1075.289 kb on + strand at 1075.587 kb on - strand at 1075.600 kb on + strand at 1075.775 kb on + strand at 1075.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 1,072,926 + +1.4 1,072,933 - -0.5 1,072,937 + +1.2 1,072,959 - -1.5 1,072,980 + -0.0 1,072,981 - -0.0 1,072,981 - -1.5 1,073,128 - -1.3 1,073,281 + pth JDDGAC_06160 0.22 -0.3 1,073,296 + pth JDDGAC_06160 0.24 -0.6 1,073,635 - pth JDDGAC_06160 0.82 -1.5 1,073,772 + -0.5 1,073,772 + -0.8 1,073,774 + +1.5 1,074,039 + ychF JDDGAC_06165 0.17 -0.9 1,074,463 + ychF JDDGAC_06165 0.56 -2.0 1,074,505 + ychF JDDGAC_06165 0.60 +1.4 1,074,505 + ychF JDDGAC_06165 0.60 -0.3 1,074,947 + -1.1 1,074,952 + -1.9 1,074,973 + -3.0 1,075,001 + -1.9 1,075,175 - +2.0 1,075,243 - -0.1 1,075,289 + +0.7 1,075,587 - +3.0 1,075,600 + +2.3 1,075,775 + +0.1 1,075,776 - -3.0
Or see this region's nucleotide sequence