Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04855

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrR and ycjF are separated by 147 nucleotidesycjF and ycjX overlap by 4 nucleotides JDDGAC_04850: tyrR - transcriptional regulator TyrR, at 841,840 to 843,381 tyrR JDDGAC_04855: ycjF - UPF0283 membrane protein YcjF, at 843,529 to 844,590 ycjF JDDGAC_04860: ycjX - Uncharacterized protein YcjX, at 844,587 to 845,984 ycjX Position (kb) 843 844 845Strain fitness (log2 ratio) -2 -1 0 1 2at 842.671 kb on - strand, within tyrRat 842.929 kb on - strand, within tyrRat 843.264 kb on - strandat 843.314 kb on - strandat 843.323 kb on - strandat 843.411 kb on - strandat 843.430 kb on - strandat 843.834 kb on - strand, within ycjFat 843.834 kb on - strand, within ycjFat 843.854 kb on + strand, within ycjFat 843.994 kb on + strand, within ycjFat 844.020 kb on - strand, within ycjFat 844.067 kb on + strand, within ycjFat 844.232 kb on - strand, within ycjFat 844.244 kb on - strand, within ycjFat 844.598 kb on + strandat 844.914 kb on + strand, within ycjXat 844.914 kb on + strand, within ycjXat 845.088 kb on - strand, within ycjXat 845.171 kb on - strand, within ycjXat 845.171 kb on - strand, within ycjXat 845.240 kb on + strand, within ycjXat 845.354 kb on + strand, within ycjXat 845.535 kb on + strand, within ycjXat 845.535 kb on + strand, within ycjX

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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842,671 - tyrR JDDGAC_04850 0.54 +0.1
842,929 - tyrR JDDGAC_04850 0.71 +0.1
843,264 - -0.8
843,314 - -0.6
843,323 - +1.8
843,411 - +1.7
843,430 - -0.5
843,834 - ycjF JDDGAC_04855 0.29 -0.5
843,834 - ycjF JDDGAC_04855 0.29 -1.5
843,854 + ycjF JDDGAC_04855 0.31 -0.5
843,994 + ycjF JDDGAC_04855 0.44 +0.8
844,020 - ycjF JDDGAC_04855 0.46 -0.3
844,067 + ycjF JDDGAC_04855 0.51 -1.8
844,232 - ycjF JDDGAC_04855 0.66 -2.3
844,244 - ycjF JDDGAC_04855 0.67 -1.3
844,598 + -1.5
844,914 + ycjX JDDGAC_04860 0.23 +1.0
844,914 + ycjX JDDGAC_04860 0.23 -0.5
845,088 - ycjX JDDGAC_04860 0.36 +0.9
845,171 - ycjX JDDGAC_04860 0.42 -0.5
845,171 - ycjX JDDGAC_04860 0.42 +2.2
845,240 + ycjX JDDGAC_04860 0.47 +0.5
845,354 + ycjX JDDGAC_04860 0.55 +2.2
845,535 + ycjX JDDGAC_04860 0.68 -0.8
845,535 + ycjX JDDGAC_04860 0.68 -0.2

Or see this region's nucleotide sequence