Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04095

Experiment: WM_Lambda

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrlhA and sutR are separated by 30 nucleotidessutR and ydcO are separated by 91 nucleotides JDDGAC_04090: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 714,725 to 716,728 rlhA JDDGAC_04095: sutR - DNA-binding transcriptional regulator SutR, at 716,759 to 717,295 sutR JDDGAC_04100: ydcO - BenE family transporter YdcO, at 717,387 to 718,559 ydcO Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.173 kb on - strand, within rlhAat 716.422 kb on - strand, within rlhAat 716.593 kb on - strandat 716.618 kb on - strandat 716.655 kb on - strandat 716.699 kb on + strandat 716.700 kb on - strandat 716.747 kb on + strandat 716.821 kb on - strand, within sutRat 716.821 kb on - strand, within sutRat 716.821 kb on - strand, within sutRat 716.821 kb on - strand, within sutRat 716.824 kb on + strand, within sutRat 717.252 kb on - strandat 717.252 kb on - strandat 717.252 kb on - strandat 717.260 kb on - strandat 717.368 kb on + strandat 717.442 kb on + strandat 717.574 kb on + strand, within ydcOat 717.574 kb on + strand, within ydcOat 717.650 kb on - strand, within ydcOat 717.677 kb on + strand, within ydcOat 717.698 kb on - strand, within ydcOat 717.744 kb on - strand, within ydcOat 717.830 kb on + strand, within ydcOat 717.889 kb on - strand, within ydcOat 717.990 kb on - strand, within ydcO

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Lambda
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716,173 - rlhA JDDGAC_04090 0.72 -1.0
716,422 - rlhA JDDGAC_04090 0.85 +0.2
716,593 - +1.5
716,618 - -0.7
716,655 - -0.1
716,699 + +0.7
716,700 - -0.7
716,747 + +2.1
716,821 - sutR JDDGAC_04095 0.12 -3.4
716,821 - sutR JDDGAC_04095 0.12 +0.4
716,821 - sutR JDDGAC_04095 0.12 -1.4
716,821 - sutR JDDGAC_04095 0.12 -1.4
716,824 + sutR JDDGAC_04095 0.12 -2.3
717,252 - +0.5
717,252 - +0.3
717,252 - +2.7
717,260 - -2.0
717,368 + -0.6
717,442 + -0.4
717,574 + ydcO JDDGAC_04100 0.16 +0.1
717,574 + ydcO JDDGAC_04100 0.16 -2.2
717,650 - ydcO JDDGAC_04100 0.22 +0.0
717,677 + ydcO JDDGAC_04100 0.25 +0.0
717,698 - ydcO JDDGAC_04100 0.27 -1.8
717,744 - ydcO JDDGAC_04100 0.30 +0.3
717,830 + ydcO JDDGAC_04100 0.38 +1.6
717,889 - ydcO JDDGAC_04100 0.43 +2.3
717,990 - ydcO JDDGAC_04100 0.51 +0.3

Or see this region's nucleotide sequence