Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntP and JDDGAC_01085 overlap by 4 nucleotides JDDGAC_01085 and JDDGAC_01090 are separated by 310 nucleotides JDDGAC_01090 and manZ are separated by 54 nucleotides manZ and manY are separated by 12 nucleotides manY and manX are separated by 62 nucleotides
JDDGAC_01080: mntP - manganese efflux pump MntP, at 181,155 to 181,721
mntP
JDDGAC_01085: JDDGAC_01085 - Membrane protein, at 181,718 to 181,840
_01085
JDDGAC_01090: JDDGAC_01090 - UPF0266 membrane protein YobD, at 182,151 to 182,609
_01090
JDDGAC_01095: manZ - PTS mannose transporter subunit IID, at 182,664 to 183,515
manZ
JDDGAC_01100: manY - PTS mannose transporter subunit IIC, at 183,528 to 184,328
manY
JDDGAC_01105: manX - PTS mannose transporter subunit IIAB, at 184,391 to 185,362
manX
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 181.716 kb on - strand at 181.748 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.780 kb on - strand, within JDDGAC_01085 at 181.873 kb on + strand at 181.909 kb on - strand at 182.363 kb on - strand, within JDDGAC_01090 at 182.403 kb on + strand, within JDDGAC_01090 at 182.434 kb on + strand, within JDDGAC_01090 at 182.548 kb on + strand, within JDDGAC_01090 at 182.654 kb on + strand at 182.654 kb on + strand at 182.763 kb on - strand, within manZ at 182.817 kb on - strand, within manZ at 182.829 kb on - strand, within manZ at 182.979 kb on - strand, within manZ at 183.324 kb on - strand, within manZ at 183.408 kb on - strand, within manZ at 183.408 kb on - strand, within manZ at 183.495 kb on - strand at 183.495 kb on - strand at 183.595 kb on + strand at 183.616 kb on + strand, within manY at 183.617 kb on - strand, within manY at 183.630 kb on - strand, within manY at 183.636 kb on - strand, within manY at 183.698 kb on - strand, within manY at 183.828 kb on + strand, within manY at 183.986 kb on + strand, within manY at 183.987 kb on - strand, within manY at 183.987 kb on - strand, within manY at 184.044 kb on - strand, within manY at 184.094 kb on + strand, within manY at 184.167 kb on - strand, within manY at 184.176 kb on - strand, within manY at 184.179 kb on - strand, within manY at 184.293 kb on - strand at 184.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 181,716 - -0.8 181,748 - JDDGAC_01085 0.24 -0.6 181,780 - JDDGAC_01085 0.50 +0.0 181,780 - JDDGAC_01085 0.50 +0.2 181,780 - JDDGAC_01085 0.50 -2.8 181,873 + -0.6 181,909 - -1.1 182,363 - JDDGAC_01090 0.46 +0.1 182,403 + JDDGAC_01090 0.55 -0.8 182,434 + JDDGAC_01090 0.62 +0.9 182,548 + JDDGAC_01090 0.86 -1.5 182,654 + -1.1 182,654 + +2.8 182,763 - manZ JDDGAC_01095 0.12 -0.8 182,817 - manZ JDDGAC_01095 0.18 -1.7 182,829 - manZ JDDGAC_01095 0.19 -3.0 182,979 - manZ JDDGAC_01095 0.37 -0.5 183,324 - manZ JDDGAC_01095 0.77 -1.9 183,408 - manZ JDDGAC_01095 0.87 -0.7 183,408 - manZ JDDGAC_01095 0.87 -1.2 183,495 - -0.8 183,495 - -0.2 183,595 + -0.5 183,616 + manY JDDGAC_01100 0.11 +0.7 183,617 - manY JDDGAC_01100 0.11 +1.7 183,630 - manY JDDGAC_01100 0.13 -0.7 183,636 - manY JDDGAC_01100 0.13 -0.0 183,698 - manY JDDGAC_01100 0.21 -0.8 183,828 + manY JDDGAC_01100 0.37 -0.8 183,986 + manY JDDGAC_01100 0.57 +1.4 183,987 - manY JDDGAC_01100 0.57 +0.7 183,987 - manY JDDGAC_01100 0.57 +1.6 184,044 - manY JDDGAC_01100 0.64 -1.0 184,094 + manY JDDGAC_01100 0.71 +0.7 184,167 - manY JDDGAC_01100 0.80 +1.2 184,176 - manY JDDGAC_01100 0.81 +0.2 184,179 - manY JDDGAC_01100 0.81 -0.5 184,293 - +1.3 184,393 - -0.5
Or see this region's nucleotide sequence