Experiment: WM_Lambda
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecH and ftnA are separated by 36 nucleotides ftnA and yecR are separated by 170 nucleotides yecR and azuC are separated by 261 nucleotides azuC and yecJ are separated by 114 nucleotides yecJ and ftnB are separated by 79 nucleotides
JDDGAC_00615: yecH - Uncharacterized protein YecH, at 98,598 to 98,837
yecH
JDDGAC_00620: ftnA - non-heme ferritin, at 98,874 to 99,371
ftnA
JDDGAC_00625: yecR - Uncharacterized protein YecR, at 99,542 to 99,865
yecR
JDDGAC_00630: azuC - stress response protein AzuC, at 100,127 to 100,213
azuC
JDDGAC_00635: yecJ - Uncharacterized protein YecJ, at 100,328 to 100,579
yecJ
JDDGAC_00640: ftnB - non-heme ferritin-like protein, at 100,659 to 101,162
ftnB
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.655 kb on + strand, within yecH at 98.655 kb on + strand, within yecH at 98.684 kb on + strand, within yecH at 98.876 kb on - strand at 98.876 kb on - strand at 98.918 kb on - strand at 98.950 kb on - strand, within ftnA at 99.005 kb on - strand, within ftnA at 99.098 kb on + strand, within ftnA at 99.213 kb on - strand, within ftnA at 99.275 kb on - strand, within ftnA at 99.301 kb on + strand, within ftnA at 99.317 kb on - strand, within ftnA at 99.393 kb on + strand at 99.535 kb on - strand at 99.608 kb on + strand, within yecR at 99.609 kb on - strand, within yecR at 99.609 kb on - strand, within yecR at 99.668 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.714 kb on + strand, within yecR at 99.770 kb on - strand, within yecR at 99.817 kb on + strand, within yecR at 99.834 kb on - strand at 99.895 kb on + strand at 99.895 kb on + strand at 99.896 kb on - strand at 99.967 kb on - strand at 100.153 kb on + strand, within azuC at 100.153 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.163 kb on - strand, within azuC at 100.201 kb on + strand, within azuC at 100.201 kb on + strand, within azuC at 100.293 kb on + strand at 100.294 kb on - strand at 100.477 kb on + strand, within yecJ at 100.478 kb on - strand, within yecJ at 100.719 kb on - strand, within ftnB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Lambda remove 98,655 + yecH JDDGAC_00615 0.24 -1.0 98,655 + yecH JDDGAC_00615 0.24 -1.3 98,684 + yecH JDDGAC_00615 0.36 -0.4 98,876 - -0.0 98,876 - -1.6 98,918 - +0.4 98,950 - ftnA JDDGAC_00620 0.15 -1.5 99,005 - ftnA JDDGAC_00620 0.26 -0.4 99,098 + ftnA JDDGAC_00620 0.45 -0.9 99,213 - ftnA JDDGAC_00620 0.68 +1.5 99,275 - ftnA JDDGAC_00620 0.81 -0.1 99,301 + ftnA JDDGAC_00620 0.86 -1.8 99,317 - ftnA JDDGAC_00620 0.89 -0.8 99,393 + -0.3 99,535 - -0.0 99,608 + yecR JDDGAC_00625 0.20 -0.2 99,609 - yecR JDDGAC_00625 0.21 -1.2 99,609 - yecR JDDGAC_00625 0.21 -2.1 99,668 - yecR JDDGAC_00625 0.39 -1.5 99,670 - yecR JDDGAC_00625 0.40 -1.1 99,670 - yecR JDDGAC_00625 0.40 -0.4 99,670 - yecR JDDGAC_00625 0.40 -1.0 99,714 + yecR JDDGAC_00625 0.53 +0.7 99,770 - yecR JDDGAC_00625 0.70 -1.3 99,817 + yecR JDDGAC_00625 0.85 +0.7 99,834 - +0.7 99,895 + +1.0 99,895 + -0.5 99,896 - +0.2 99,967 - +3.2 100,153 + azuC JDDGAC_00630 0.30 +1.2 100,153 + azuC JDDGAC_00630 0.30 -2.6 100,162 + azuC JDDGAC_00630 0.40 -0.6 100,162 + azuC JDDGAC_00630 0.40 +0.7 100,162 + azuC JDDGAC_00630 0.40 -0.4 100,163 - azuC JDDGAC_00630 0.41 -0.9 100,201 + azuC JDDGAC_00630 0.85 -2.2 100,201 + azuC JDDGAC_00630 0.85 -0.6 100,293 + -0.3 100,294 - -0.4 100,477 + yecJ JDDGAC_00635 0.59 -0.3 100,478 - yecJ JDDGAC_00635 0.60 -1.0 100,719 - ftnB JDDGAC_00640 0.12 -2.1
Or see this region's nucleotide sequence